Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 0.0e+00 1396.3 677 100.0
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1200.3 665 86.9
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1186.8 669 85.8
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1176.4 689 82.0
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1161.4 667 82.2
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1087.0 666 77.3
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 4.6e-312 1073.9 666 76.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 4.6e-312 1073.5 668 76.0
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.3e-309 1065.8 669 74.4
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.0e-309 1064.7 666 75.4
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.1e-307 1058.5 668 75.1
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.7e-307 1057.4 668 75.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 2.3e-306 1055.0 668 74.0
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.1e-306 1054.7 668 74.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 6.8e-306 1053.5 668 75.1
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.9e-306 1053.1 668 74.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.4e-305 1051.2 674 74.5
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.7e-304 1048.9 674 74.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 3.8e-304 1047.7 669 74.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 6.4e-304 1047.0 669 73.7
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.1e-303 1046.2 674 73.4
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 1.4e-303 1045.8 670 73.9
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.2e-302 1042.7 672 73.2
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.0e-301 1039.6 666 73.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.7e-301 1038.9 669 72.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 2.3e-301 1038.5 670 74.0
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 3.9e-301 1037.7 668 73.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.9e-301 1037.7 666 74.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 6.6e-301 1036.9 669 73.7
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 1.1e-300 1036.2 668 73.1
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 2.5e-300 1035.0 672 72.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 5.6e-300 1033.9 668 73.4
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 7.3e-300 1033.5 669 72.8
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 9.6e-300 1033.1 666 74.0
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.1e-299 1031.9 672 72.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.1e-299 1030.0 666 73.0
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.8e-298 1028.9 668 74.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 5.2e-298 1027.3 678 72.3
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 6.9e-298 1026.9 666 73.3
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.5e-297 1025.8 670 72.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 2.0e-297 1025.4 662 74.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.9e-296 1021.5 666 72.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 4.9e-296 1020.8 669 72.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 4.9e-296 1020.8 672 72.5
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.1e-295 1019.6 666 72.4
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 1.1e-295 1019.6 670 72.5
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.4e-295 1019.2 671 71.5
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 1.9e-295 1018.8 666 73.0
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 3.2e-295 1018.1 673 72.5
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 4.2e-295 1017.7 667 72.3
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 7.1e-295 1016.9 803 63.0
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 2.1e-294 1015.4 669 71.4
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.0e-293 1013.1 670 71.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 3.0e-293 1011.5 671 72.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 3.9e-293 1011.1 667 72.0
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 1.1e-292 1009.6 667 71.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.5e-292 1009.2 667 71.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.3e-291 1006.1 671 70.8
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 1.6e-291 1005.7 668 71.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.6e-291 1005.7 712 68.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.8e-291 1005.0 668 71.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 3.6e-291 1004.6 669 71.3
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 6.2e-291 1003.8 669 72.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 8.1e-291 1003.4 669 71.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 6.9e-290 1000.3 669 71.3
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 2.0e-289 998.8 669 70.1
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 6.4e-288 993.8 669 70.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 4.6e-286 987.6 669 70.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.3e-285 986.1 667 69.7
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 8.7e-285 983.4 676 68.9
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 3.4e-281 971.5 665 70.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 3.4e-281 971.5 665 69.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 4.9e-280 967.6 663 70.4
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 3.9e-277 958.0 677 68.2
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 7.4e-276 953.7 777 62.3
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 9.0e-274 946.8 666 68.2
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.6e-273 945.3 681 67.4
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 5.8e-273 944.1 668 66.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.7e-272 942.6 677 67.7
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.2e-272 942.2 666 67.9
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 8.4e-272 940.3 679 66.9
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.9e-271 939.1 654 69.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 2.5e-271 938.7 669 67.4
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 3.2e-271 938.3 670 67.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 4.2e-271 937.9 667 67.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 7.1e-271 937.2 681 67.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 2.1e-270 935.6 676 67.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 3.5e-270 934.9 664 68.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 4.6e-270 934.5 668 67.5
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 6.0e-270 934.1 668 67.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.3e-269 932.2 667 66.3
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 3.8e-264 914.8 667 65.2
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 6.5e-264 914.1 669 67.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.3e-261 905.6 665 64.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.3e-260 901.4 568 75.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 3.1e-258 895.2 667 63.9
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.5e-257 892.9 594 71.4
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.7e-248 862.8 669 62.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 3.7e-243 845.1 670 61.0
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 9.8e-212 740.7 682 54.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 8.0e-206 721.1 669 54.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.0e-200 704.1 667 53.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 1.4e-194 683.7 669 54.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.6e-193 678.7 405 77.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.3e-168 596.7 465 61.9
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 9.0e-157 558.1 670 45.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.7e-134 484.2 367 62.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.7e-126 457.6 365 59.5
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.4e-120 438.0 264 76.9
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.7e-103 379.4 235 74.5
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.0e-99 368.6 226 77.4
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-97 360.9 247 70.4
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.5e-92 343.6 280 60.4
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.0e-91 339.7 296 60.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.0e-87 327.8 195 74.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 8.3e-86 322.4 192 77.6
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 5.4e-85 319.7 690 33.2
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 7.0e-85 319.3 814 30.0
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 6.0e-84 316.2 193 75.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.5e-79 301.6 945 26.5
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.9e-75 287.0 639 35.1
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 9.5e-74 282.3 238 60.9
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.1e-65 254.6 383 41.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.5e-50 204.5 129 68.2
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.5e-42 178.7 152 57.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.2e-37 161.0 98 73.5
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 2.3e-35 154.8 427 31.1
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 6.7e-35 153.3 123 60.2
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.9e-29 135.2 77 77.9
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.0e-27 127.9 69 84.1
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.5e-26 125.6 81 70.4
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.1e-24 119.4 180 41.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-23 115.2 101 65.3
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.0e-23 115.2 101 65.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.8e-22 110.9 69 73.9
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.5e-22 110.2 69 65.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-18 99.4 64 68.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-18 98.6 62 74.2
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 4.4e-18 97.4 77 57.1
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.0e-15 88.6 53 73.6
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.0e-11 76.3 59 50.8
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.4e-11 75.9 99 41.4
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 6.3e-09 67.0 86 43.0


User provided reference genes

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