Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g137230 Amaranthus hybridus HOM05D000425 ORTHO05D000373 1.0e-75 286.6 140 100.0
AUR62038484 Chenopodium quinoa HOM05D000425 ORTHO05D000373 2.7e-15 85.9 86 59.3
Rhsim02G0095000 Rhododendron simsii HOM05D000425 ORTHO05D000373 1.0e-14 84.0 90 56.7
TAR633G2021 Trochodendron aralioides HOM05D000425 ORTHO05D000373 5.1e-14 81.6 86 57.0
vmacro07124 Vaccinium macrocarpon HOM05D000425 ORTHO05D000373 6.7e-14 81.3 93 51.6
Migut.F01722 Erythranthe guttata HOM05D000425 ORTHO05D000373 1.5e-13 80.1 86 57.0
Gohir.A10G204200 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.9e-13 79.7 74 60.8
Gohir.D10G212100 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.9e-13 79.7 74 60.8
Gorai.011G238000 Gossypium raimondii HOM05D000425 ORTHO05D000373 1.9e-13 79.7 74 60.8
Potri.010G226000 Populus trichocarpa HOM05D000425 ORTHO05D000373 3.3e-13 79.0 86 57.0
Actinidia32438 Actinidia chinensis HOM05D000425 ORTHO05D000373 4.3e-13 78.6 86 57.0
Potri.008G036300 Populus trichocarpa HOM05D000425 ORTHO05D000373 4.3e-13 78.6 86 54.7
Ciclev10031131m.g Citrus clementina HOM05D000425 ORTHO05D000373 9.6e-13 77.4 86 57.0
Thecc.10G080300 Theobroma cacao HOM05D000425 ORTHO05D000373 9.6e-13 77.4 76 61.8
TWI38G1268 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 9.6e-13 77.4 86 53.5
Nn2g13759 Nelumbo nucifera HOM05D000425 ORTHO05D000373 1.3e-12 77.0 50 82.0
Sabra10G0174200 Salix brachista HOM05D000425 ORTHO05D000373 1.3e-12 77.0 86 55.8
Sopen03g015340 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-12 77.0 101 46.5
GSVIVG01016234001 Vitis vinifera HOM05D000425 ORTHO05D000373 1.3e-12 77.0 86 55.8
Migut.F01963 Erythranthe guttata HOM05D000425 ORTHO05D000373 1.6e-12 76.6 99 52.5
Manes.07G095400 Manihot esculenta HOM05D000425 ORTHO05D000373 1.6e-12 76.6 86 54.7
Manes.10G049300 Manihot esculenta HOM05D000425 ORTHO05D000373 2.1e-12 76.3 86 55.8
Nn2g11557 Nelumbo nucifera HOM05D000425 ORTHO05D000373 2.1e-12 76.3 86 54.7
PGR044G0567 Punica granatum HOM05D000425 ORTHO05D000373 2.1e-12 76.3 84 57.1
CSS0006346 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 2.8e-12 75.9 86 53.5
Duzib114G0694 Durio zibethinus HOM05D000425 ORTHO05D000373 2.8e-12 75.9 74 60.8
Sc09g0006110 Simmondsia chinensis HOM05D000425 ORTHO05D000373 2.8e-12 75.9 86 54.7
Cc02_g11040 Coffea canephora HOM05D000425 ORTHO05D000373 3.7e-12 75.5 85 51.8
Peaxi162Scf00253g00417 Petunia axillaris HOM05D000425 ORTHO05D000373 3.7e-12 75.5 86 54.7
Aqoxy1G01173_Aqoxy1G01174 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 4.8e-12 75.1 86 53.5
Duzib128G1117 Durio zibethinus HOM05D000425 ORTHO05D000373 4.8e-12 75.1 72 62.5
Gohir.A05G294300 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.8e-12 75.1 74 59.5
Gohir.D05G294800 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.8e-12 75.1 74 59.5
Gorai.009G311500 Gossypium raimondii HOM05D000425 ORTHO05D000373 4.8e-12 75.1 74 59.5
PSO063G3625 Papaver somniferum HOM05D000425 ORTHO05D000373 4.8e-12 75.1 86 51.2
PSO339G4452 Papaver somniferum HOM05D000425 ORTHO05D000373 4.8e-12 75.1 86 51.2
Sabra08G0024400 Salix brachista HOM05D000425 ORTHO05D000373 4.8e-12 75.1 86 54.7
TAR623G0819 Trochodendron aralioides HOM05D000425 ORTHO05D000373 4.8e-12 75.1 45 86.7
Nitab4.5_0002233g0010 Nicotiana tabacum HOM05D000425 ORTHO05D000373 6.3e-12 74.7 47 78.7
Oeu035819.2 Olea europaea HOM05D000425 ORTHO05D000373 6.3e-12 74.7 86 54.7
CiPaw.01G269900 Carya illinoinensis HOM05D000425 ORTHO05D000373 8.2e-12 74.3 86 50.0
A04p29800 Brassica napus HOM05D000425 ORTHO05D000373 1.1e-11 73.9 57 66.7
C04p67060 Brassica napus HOM05D000425 ORTHO05D000373 1.1e-11 73.9 57 66.7
Thecc.10G080000 Theobroma cacao HOM05D000425 ORTHO05D000373 1.1e-11 73.9 74 60.8
Aqoxy2G01796 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 1.4e-11 73.6 50 76.0
Eucgr.J01066 Eucalyptus grandis HOM05D000425 ORTHO05D000373 1.4e-11 73.6 84 56.0
Lsat_1_v5_gn_2_112901 Lactuca sativa HOM05D000425 ORTHO05D000373 1.4e-11 73.6 85 54.1
Sc23g0004910 Simmondsia chinensis HOM05D000425 ORTHO05D000373 1.4e-11 73.6 84 53.6
Solyc03g063040.4 Solanum lycopersicum HOM05D000425 ORTHO05D000373 1.4e-11 73.6 86 50.0
Sopen03g015320 Solanum pennellii HOM05D000425 ORTHO05D000373 1.8e-11 73.2 50 72.0
Oeu000808.1 Olea europaea HOM05D000425 ORTHO05D000373 2.4e-11 72.8 86 52.3
PGSC0003DMG400007424 Solanum tuberosum HOM05D000425 ORTHO05D000373 2.4e-11 72.8 57 68.4
Peaxi162Scf00662g00415 Petunia axillaris HOM05D000425 ORTHO05D000373 3.1e-11 72.4 50 76.0
MSTRG.384 Avicennia marina HOM05D000425 ORTHO05D000373 4.1e-11 72.0 100 47.0
BcaC02g12911 Brassica carinata HOM05D000425 ORTHO05D000373 4.1e-11 72.0 57 66.7
Dinv36404 Davidia involucrata HOM05D000425 ORTHO05D000373 4.1e-11 72.0 50 78.0
SalBow4G1724 Salvia bowleyana HOM05D000425 ORTHO05D000373 4.1e-11 72.0 86 52.3
SalBow4G1926 Salvia bowleyana HOM05D000425 ORTHO05D000373 4.1e-11 72.0 86 52.3
Actinidia06741 Actinidia chinensis HOM05D000425 ORTHO05D000373 5.3e-11 71.6 86 50.0
CAN.G779.2 Capsicum annuum HOM05D000425 ORTHO05D000373 6.9e-11 71.2 50 68.0
Carub.0004s2118 Capsella rubella HOM05D000425 ORTHO05D000373 1.2e-10 70.5 62 62.9
Thhalv10016467m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 1.2e-10 70.5 62 64.5
Lj3A881T67 Lonicera japonica HOM05D000425 ORTHO05D000373 1.2e-10 70.5 50 76.0
Sed0022938 Sechium edule HOM05D000425 ORTHO05D000373 1.2e-10 70.5 86 51.2
SGA_v2.0_scaffold62G21395 Striga asiatica HOM05D000425 ORTHO05D000373 1.2e-10 70.5 99 48.5
AL4G36430 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 1.5e-10 70.1 62 62.9
AL92U10100 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 1.5e-10 70.1 62 62.9
arahy.Tifrunner.gnm1.ann1.N0MV1J Arachis hypogaea HOM05D000425 ORTHO05D000373 1.5e-10 70.1 85 49.4
Oeu020826.1 Olea europaea HOM05D000158 ORTHO05D000197 1.5e-10 70.1 86 50.0
BolC4t28208H Brassica oleracea HOM05D000425 ORTHO05D000373 2.0e-10 69.7 62 62.9
MELO3C019816.2 Cucumis melo HOM05D000425 ORTHO05D000373 2.0e-10 69.7 86 50.0
Oeu015082.1 Olea europaea HOM05D000425 ORTHO05D000373 2.6e-10 69.3 86 53.5
Sp4g21480 Schrenkiella parvula HOM05D000425 ORTHO05D000373 2.6e-10 69.3 62 64.5
BcaB02g09142 Brassica carinata HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
BcaC02g12041 Brassica carinata HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
A05p07170 Brassica napus HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
C04p08580 Brassica napus HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
BolC4t22453H Brassica oleracea HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
BraA05t19682Z Brassica rapa HOM05D000425 ORTHO05D000373 3.4e-10 68.9 62 62.9
CSS0002138 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 3.4e-10 68.9 86 53.5
Duzib106G1167 Durio zibethinus HOM05D000425 ORTHO05D000373 3.4e-10 68.9 76 56.6
Lj2A18T49 Lonicera japonica HOM05D000425 ORTHO05D000373 3.4e-10 68.9 86 51.2
CsaV3_6G036610 Cucumis sativus L. HOM05D000425 ORTHO05D000373 4.5e-10 68.6 86 50.0
DCAR_019090 Daucus carota HOM05D000425 ORTHO05D000373 4.5e-10 68.6 85 54.1
Glyma.10G208800 Glycine max HOM05D000425 ORTHO05D000373 4.5e-10 68.6 85 49.4
Lalb_Chr03g0036411 Lupinus albus HOM05D000425 ORTHO05D000373 4.5e-10 68.6 50 72.0
Oeu046635.3 Olea europaea HOM05D000425 ORTHO05D000373 4.5e-10 68.6 44 81.8
AT2G39130 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 5.9e-10 68.2 62 61.3
Glyma.20G181900 Glycine max HOM05D000425 ORTHO05D000373 5.9e-10 68.2 85 49.4
HanXRQChr08g0218621 Helianthus annuus HOM05D000425 ORTHO05D000373 5.9e-10 68.2 86 48.8
unitig_26.g9458 Utricularia gibba HOM05D000425 ORTHO05D000373 5.9e-10 68.2 66 59.1
CAN.G321.40 Capsicum annuum HOM05D000425 ORTHO05D000373 7.6e-10 67.8 50 74.0
Lsat_1_v5_gn_8_20561 Lactuca sativa HOM05D000425 ORTHO05D000373 7.6e-10 67.8 85 47.1
Lj5g0024381 Lotus japonicus HOM05D000425 ORTHO05D000373 7.6e-10 67.8 86 48.8
CDE05G0235 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 1.0e-09 67.4 74 52.7
THA.LOC104825222 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 1.0e-09 67.4 50 74.0
ClCG08G007640 Citrullus lanatus HOM05D000425 ORTHO05D000373 1.3e-09 67.0 86 48.8
Lj6g0013335 Lotus japonicus HOM05D000425 ORTHO05D000373 1.3e-09 67.0 62 59.7
Psat6g181960 Pisum sativum HOM05D000425 ORTHO05D000373 1.3e-09 67.0 62 58.1
Lalb_Chr01g0010451 Lupinus albus HOM05D000425 ORTHO05D000373 1.7e-09 66.6 86 48.8
Lalb_Chr19g0129121 Lupinus albus HOM05D000425 ORTHO05D000373 2.2e-09 66.2 50 68.0
Solyc11g008440.3 Solanum lycopersicum HOM05D000425 ORTHO05D000373 2.2e-09 66.2 65 61.5
Sopen11g004230 Solanum pennellii HOM05D000425 ORTHO05D000373 2.2e-09 66.2 65 61.5
Sed0010197 Sechium edule HOM05D000425 ORTHO05D000373 2.9e-09 65.9 86 46.5
ATR0680G312 Amborella trichopoda HOM05D000425 ORTHO05D000373 3.8e-09 65.5 83 50.6
Phvul.007G097200 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 3.8e-09 65.5 50 70.0
TPR.G1954 Trifolium pratense HOM05D000425 ORTHO05D000373 3.8e-09 65.5 85 47.1
Ca_10549_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 5.0e-09 65.1 85 47.1
HanXRQChr08g0218601 Helianthus annuus HOM05D000425 ORTHO05D000373 5.0e-09 65.1 62 59.7
HanXRQChr08g0218641 Helianthus annuus HOM05D000425 ORTHO05D000373 5.0e-09 65.1 81 51.9
TPR.G10650 Trifolium pratense HOM05D000425 ORTHO05D000373 5.0e-09 65.1 104 43.3
CARHR133890 Cardamine hirsuta HOM05D000425 ORTHO05D000373 6.5e-09 64.7 63 63.5
MD01G1104700 Malus domestica HOM05D000425 ORTHO05D000373 6.5e-09 64.7 86 50.0
Nitab4.5_0000819g0070 Nicotiana tabacum HOM05D000425 ORTHO05D000373 6.5e-09 64.7 45 71.1
Aa31LG5G20470 Aethionema arabicum HOM05D000425 ORTHO05D000373 8.5e-09 64.3 50 70.0
DCAR_019091 Daucus carota HOM05D000425 ORTHO05D000373 1.1e-08 63.9 58 65.5
BraA04t18442Z Brassica rapa HOM05D000425 ORTHO05D000373 1.4e-08 63.5 59 61.0
Phvul.007G242400 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 1.4e-08 63.5 62 59.7
CANSAT56G4283 Cannabis sativa HOM05D000425 ORTHO05D000373 1.9e-08 63.2 87 49.4
Prupe.2G209900 Prunus persica HOM05D000425 ORTHO05D000373 1.9e-08 63.2 76 55.3
Sp5g07590 Schrenkiella parvula HOM05D000425 ORTHO05D000373 1.9e-08 63.2 50 70.0
Carub.0005s2143 Capsella rubella HOM05D000425 ORTHO05D000373 2.5e-08 62.8 50 70.0
Thhalv10010278m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 2.5e-08 62.8 50 70.0
Medtr1g094620 Medicago truncatula HOM05D000425 ORTHO05D000373 2.5e-08 62.8 62 53.2
ECA238G4802 Erigeron canadensis HOM05D000425 ORTHO05D000373 3.2e-08 62.4 86 48.8
Glyma.02G160900 Glycine max HOM05D000425 ORTHO05D000373 3.2e-08 62.4 62 58.1
Glyma.10G109500 Glycine max HOM05D000425 ORTHO05D000373 3.2e-08 62.4 62 58.1
Atru.chr12.830 Acer truncatum HOM05D000425 ORTHO05D000373 4.2e-08 62.0 50 68.0
BcaB01g00156 Brassica carinata HOM05D000425 ORTHO05D000373 4.2e-08 62.0 50 68.0
BcaC07g39779 Brassica carinata HOM05D000425 ORTHO05D000373 4.2e-08 62.0 50 68.0
A09p47760 Brassica napus HOM05D000425 ORTHO05D000373 4.2e-08 62.0 50 68.0
C08p29990 Brassica napus HOM05D000425 ORTHO05D000373 4.2e-08 62.0 50 68.0
ClCG05G021180 Citrullus lanatus HOM05D000425 ORTHO05D000373 5.5e-08 61.6 62 58.1
Sed0017499 Sechium edule HOM05D000425 ORTHO05D000373 5.5e-08 61.6 62 59.7
PGR142G2295 Punica granatum HOM05D000425 ORTHO05D000373 7.2e-08 61.2 84 47.6
CARHR164780 Cardamine hirsuta HOM05D000425 ORTHO05D000373 1.2e-07 60.5 51 70.6
CsaV3_5G036080 Cucumis sativus L. HOM05D000425 ORTHO05D000373 1.2e-07 60.5 62 54.8
ATR0559G141 Amborella trichopoda HOM05D000425 ORTHO05D000373 2.1e-07 59.7 74 44.6
arahy.Tifrunner.gnm1.ann1.3H39ZY Arachis hypogaea HOM05D000425 ORTHO05D000373 2.1e-07 59.7 62 54.8
arahy.Tifrunner.gnm1.ann1.K7T5R5 Arachis hypogaea HOM05D000425 ORTHO05D000373 2.1e-07 59.7 62 54.8
MD07G1171300 Malus domestica HOM05D000425 ORTHO05D000373 2.1e-07 59.7 81 49.4
Lalb_Chr02g0152161 Lupinus albus HOM05D000425 ORTHO05D000373 2.7e-07 59.3 80 45.0
Psat6g093880 Pisum sativum HOM05D000425 ORTHO05D000373 2.7e-07 59.3 62 56.5
Nn2g11172 Nelumbo nucifera HOM05D000425 ORTHO05D000373 3.6e-07 58.9 85 44.7
MELO3C012409.2 Cucumis melo HOM05D000425 ORTHO05D000373 4.6e-07 58.5 62 54.8
Glyma.18G154800 Glycine max HOM05D000425 ORTHO05D000373 4.6e-07 58.5 80 46.2
Lalb_Chr21g0313751 Lupinus albus HOM05D000425 ORTHO05D000373 4.6e-07 58.5 53 58.5
AT3G54830 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 6.1e-07 58.2 89 48.3
FAN01G1533 Fragaria x ananassa HOM05D000425 ORTHO05D000373 6.1e-07 58.2 86 47.7
FAN06G2715 Fragaria x ananassa HOM05D000425 ORTHO05D000373 6.1e-07 58.2 86 47.7
FAN06G3886 Fragaria x ananassa HOM05D000425 ORTHO05D000373 6.1e-07 58.2 86 47.7
PSO339G5781 Papaver somniferum HOM05D000425 ORTHO05D000373 6.1e-07 58.2 58 56.9
SGA_v2.0_scaffold75G24962 Striga asiatica HOM05D000425 ORTHO05D000373 6.1e-07 58.2 65 46.2
FAN10G3551 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.0e-06 57.4 86 46.5
CSS0030057 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 1.3e-06 57.0 76 46.1
Migut.J00310 Erythranthe guttata HOM05D000425 ORTHO05D000373 2.3e-06 56.2 60 50.0
Manes.08G081200 Manihot esculenta HOM05D000425 ORTHO05D000373 2.3e-06 56.2 85 43.5
SMO334G0096 Selaginella moellendorffii HOM05D000425 ORTHO05D000373 2.3e-06 56.2 74 45.9
Aqoxy1G00896 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 3.0e-06 55.8 91 42.9
Medtr1g050325 Medicago truncatula HOM05D000425 ORTHO05D000373 3.0e-06 55.8 62 53.2
PSO063G2924 Papaver somniferum HOM05D000425 ORTHO05D000373 3.0e-06 55.8 58 55.2
TWI77G0985 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 3.0e-06 55.8 62 48.4
unitig_578.g15689 Utricularia gibba HOM05D000425 ORTHO05D000373 3.0e-06 55.8 65 46.2
AL6G11410 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 3.9e-06 55.5 65 52.3
MBI05_g29686_MAGBIO Magnolia biondii HOM05D000425 ORTHO05D003392 3.9e-06 55.5 50 58.0
C09p74330 Brassica napus HOM05D000425 ORTHO05D000373 6.7e-06 54.7 65 50.8
BolC9t60167H Brassica oleracea HOM05D000425 ORTHO05D000373 6.7e-06 54.7 65 50.8
Nitab4.5_0004385g0030 Nicotiana tabacum HOM05D000425 ORTHO05D000373 6.7e-06 54.7 91 41.8
arahy.Tifrunner.gnm1.ann1.9178ZA Arachis hypogaea HOM05D000425 ORTHO05D000373 8.7e-06 54.3 104 32.7
Eucgr.K03109 Eucalyptus grandis HOM05D000425 ORTHO05D000373 8.7e-06 54.3 60 48.3


User provided reference genes

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