Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 3847.0 1934 100.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2724.1 1943 71.5
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2649.8 1986 69.6
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2584.3 1943 69.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2285.8 1833 62.5
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2272.7 1972 59.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2199.5 1970 56.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2197.9 1934 57.1
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2197.9 1943 57.8
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2192.9 1947 57.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2177.5 1945 57.2
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2172.1 1959 56.8
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2162.9 2014 56.3
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2130.1 1935 55.9
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2126.3 1941 54.9
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2115.9 1933 55.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2107.4 1943 55.2
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2103.9 1986 54.7
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2101.2 1938 55.6
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2099.7 1942 55.4
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2090.8 1957 55.2
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2087.8 1954 54.3
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2084.3 1924 54.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2077.8 1949 54.9
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2069.7 1936 54.4
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2068.5 1936 54.7
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2067.7 1934 54.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2067.0 1965 54.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2065.4 1952 54.1
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2062.3 1937 54.9
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2058.5 1978 53.5
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2055.8 1938 54.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2054.6 1957 53.7
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2054.3 1938 54.4
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2038.1 1934 54.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2035.0 2159 50.7
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2034.6 1948 53.7
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2025.0 1931 53.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2024.2 1922 54.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2013.4 1939 53.3
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2010.7 1973 54.0
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2006.5 1835 55.2
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 1965 52.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1990.3 2134 50.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1988.4 1939 53.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1979.9 2128 49.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1979.5 1963 52.3
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1974.9 1963 52.1
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1972.6 1950 52.4
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1966.4 1944 53.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1964.5 1948 52.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1964.1 1931 52.5
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1964.1 1944 52.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1963.7 1939 53.5
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1962.6 1948 53.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1962.2 1945 51.9
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1961.8 1926 52.4
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1959.1 1944 52.2
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1951.4 1953 51.8
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1951.0 1953 51.8
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1949.9 2237 47.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1949.1 1947 51.6
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1946.0 1939 51.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1943.7 1929 52.5
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1942.2 1930 53.5
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1929.8 1929 52.4
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1923.7 1950 51.5
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1919.4 1948 51.6
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1918.7 1987 49.2
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1902.5 1948 51.2
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1899.8 1797 53.6
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1868.6 1928 51.2
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1832.0 1942 51.1
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1812.7 1925 50.4
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1812.0 1599 58.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1783.8 1820 51.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1727.2 1976 46.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1416.0 1265 56.4
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1402.9 1162 60.3
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1322.8 1828 41.3
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1298.5 1262 52.8
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1250.0 2030 38.0
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1221.8 1993 37.1
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1154.0 2014 36.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1126.3 1420 44.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1125.5 1078 54.2
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.7e-305 1052.0 1151 49.3
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 4.7e-291 1005.7 2109 33.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 3.1e-287 993.0 993 51.5
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.4e-247 861.3 1018 46.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.0e-237 827.0 781 54.3
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 6.9e-234 815.8 956 47.7
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.6e-220 769.6 959 46.0
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 3.7e-219 766.9 885 46.9
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.6e-217 760.8 775 52.0
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.7e-200 704.9 1112 37.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 3.6e-166 590.9 653 50.2
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.8e-160 570.9 483 61.3
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 6.8e-149 533.5 521 53.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 7.5e-148 530.0 525 52.2
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.2e-145 522.7 533 49.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.4e-130 470.7 651 42.1
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.1e-129 468.8 395 58.5
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.1e-127 463.0 447 51.9
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.8e-125 455.7 427 53.2
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.1e-118 430.3 292 70.5
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.6e-116 425.2 840 32.6
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.5e-95 355.5 334 54.8
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.4e-92 345.1 251 62.5
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 6.7e-88 330.9 216 75.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.9e-85 320.9 373 44.0
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 8.5e-83 313.9 338 51.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.7e-65 255.0 228 55.3
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.5e-60 238.4 230 56.1
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.8e-56 226.5 192 57.3
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 8.8e-56 224.2 192 55.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 3.7e-54 218.8 373 37.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.5e-52 211.8 302 39.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.3e-48 199.5 289 44.6
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 3.0e-48 199.1 517 29.2
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 9.8e-47 194.1 315 36.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 6.6e-35 154.8 164 47.6
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 8.0e-33 147.9 285 35.1
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.2e-29 136.0 138 50.7
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.0e-27 128.6 97 68.0
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.5e-26 126.3 140 52.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 8.0e-25 121.3 132 49.2
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-24 120.6 94 60.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 5.8e-23 115.2 127 48.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-22 114.0 283 30.0
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 3.7e-22 112.5 100 54.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-21 110.9 145 46.2
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.9e-21 110.2 147 40.8
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 9.2e-21 107.8 193 36.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.0e-19 104.4 286 28.0
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.7e-19 103.6 92 48.9
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.4e-15 89.0 108 50.0
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 3.7e-14 85.9 105 43.8
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 4.1e-13 82.4 212 27.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 9.2e-13 81.3 94 48.9
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.2e-12 80.9 88 47.7
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.3e-11 77.4 151 31.1
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 3.0e-11 76.3 89 40.4
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.5e-10 73.2 74 45.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.5e-10 73.2 74 45.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 5.6e-10 72.0 74 44.6
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 2.8e-09 69.7 99 36.4
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 5.2e-08 65.5 120 32.5
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 5.2e-08 65.5 195 28.7
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 4.4e-07 62.4 118 31.4
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 5.8e-07 62.0 49 59.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 2.2e-06 60.1 116 33.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 2.2e-06 60.1 116 33.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.8e-06 59.3 54 48.1


User provided reference genes

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