Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 1.3e-143 513.1 270 100.0
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.9e-110 402.9 276 79.3
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 4.8e-109 398.3 275 78.9
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 2.2e-98 362.8 272 73.9
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 2.5e-94 349.4 277 69.3
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.6e-93 346.7 273 70.3
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 2.8e-93 345.9 233 76.4
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.1e-92 344.0 275 69.8
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.1e-92 344.0 278 69.1
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.8e-92 343.2 281 68.7
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 3.1e-92 342.4 271 67.5
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 9.0e-92 340.9 284 69.0
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 9.0e-92 340.9 277 68.2
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 2.0e-91 339.7 271 70.1
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 5.8e-91 338.2 275 67.3
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 7.6e-91 337.8 273 67.0
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 6.5e-90 334.7 248 71.8
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 8.4e-90 334.3 272 66.2
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-89 334.0 274 65.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.1e-89 334.0 274 65.7
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.9e-89 333.2 277 68.2
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 2.5e-89 332.8 273 68.1
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.2e-89 332.4 278 67.3
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 3.2e-89 332.4 231 75.3
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 5.5e-89 331.6 263 70.7
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 5.5e-89 331.6 263 71.1
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 5.5e-89 331.6 276 68.8
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 5.5e-89 331.6 273 69.2
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 9.3e-89 330.9 276 66.3
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 1.2e-88 330.5 277 67.1
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.1e-88 329.7 265 69.1
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 2.1e-88 329.7 273 69.2
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 3.5e-88 328.9 271 67.9
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 3.5e-88 328.9 269 66.9
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 3.5e-88 328.9 264 67.4
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 4.6e-88 328.6 279 64.9
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 1.0e-87 327.4 231 74.5
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.8e-87 326.6 225 75.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 2.3e-87 326.2 198 82.8
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 2.3e-87 326.2 271 68.6
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 6.7e-87 324.7 212 79.2
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-86 323.9 279 66.3
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.5e-86 323.6 218 76.6
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 2.5e-86 322.8 204 80.4
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.3e-86 322.4 273 67.0
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.7e-86 321.6 277 66.4
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 5.7e-86 321.6 268 66.0
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 5.7e-86 321.6 232 71.6
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 9.7e-86 320.9 234 70.9
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 9.7e-86 320.9 238 73.9
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.6e-85 320.1 284 64.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.6e-85 320.1 280 65.0
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 2.2e-85 319.7 274 66.8
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.8e-85 319.3 195 84.1
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 2.8e-85 319.3 197 82.2
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.8e-85 319.3 187 86.1
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 2.8e-85 319.3 189 87.8
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 3.7e-85 318.9 230 71.7
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 4.8e-85 318.5 276 65.2
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.8e-85 318.5 274 66.4
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 6.3e-85 318.2 280 64.6
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 6.3e-85 318.2 237 73.4
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 8.2e-85 317.8 270 65.9
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 8.2e-85 317.8 274 67.2
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.8e-84 316.6 188 85.6
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 1.8e-84 316.6 240 71.2
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 4.1e-84 315.5 238 70.6
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 4.1e-84 315.5 237 73.0
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 9.0e-84 314.3 191 84.8
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.2e-83 313.9 275 66.2
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.0e-83 313.2 249 70.3
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 2.0e-83 313.2 260 67.3
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 4.5e-83 312.0 268 66.8
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 1.3e-82 310.5 278 64.4
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.7e-82 310.1 270 65.6
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.7e-82 310.1 274 65.7
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 2.9e-82 309.3 273 65.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 5.0e-82 308.5 272 64.7
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 6.5e-82 308.1 278 63.3
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 6.5e-82 308.1 278 63.3
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 6.5e-82 308.1 231 72.3
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 8.5e-82 307.8 274 65.0
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.4e-81 307.0 270 64.8
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.4e-81 307.0 286 64.7
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.9e-81 306.6 272 64.0
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 2.5e-81 306.2 241 68.0
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 3.2e-81 305.8 272 64.0
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 1.2e-80 303.9 272 63.6
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.1e-80 303.1 194 80.9
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 2.1e-80 303.1 225 72.0
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.7e-80 302.8 270 64.1
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 3.6e-80 302.4 272 63.2
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 4.6e-80 302.0 270 63.7
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.4e-79 300.4 233 68.2
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 3.0e-79 299.3 186 80.6
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 3.0e-79 299.3 273 64.8
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 9.7e-78 294.3 190 75.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 9.7e-78 294.3 185 77.3
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.4e-76 290.4 193 76.7
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.4e-71 273.9 244 61.9
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 1.1e-68 264.2 275 54.9
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 7.0e-68 261.5 188 68.1
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.6e-67 259.6 242 62.4
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 5.9e-67 258.5 235 64.7
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.0e-63 247.7 194 64.9
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.4e-60 237.3 232 55.6
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 5.0e-58 228.8 153 76.5
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 3.2e-57 226.1 217 62.2
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 1.0e-55 221.1 272 51.1
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.2e-50 203.4 171 64.3
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 1.0e-47 194.5 110 85.5
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 5.2e-47 192.2 139 73.4
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 8.3e-45 184.9 239 43.9
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.1e-44 184.5 180 58.3
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 1.8e-44 183.7 185 51.4
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.3e-42 177.6 110 77.3
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 3.7e-37 159.5 188 46.8
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.3e-29 131.7 118 64.4
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.7e-24 115.9 148 47.3
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 7.3e-17 92.0 109 52.3
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.0e-14 84.0 50 80.0
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 3.4e-14 83.2 93 55.9
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 7.3e-09 65.5 44 63.6
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 2.8e-08 63.5 44 65.9
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.8e-08 63.5 65 56.9


User provided reference genes

Program Settings