Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 5.6e-248 860.5 444 100.0
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.4e-211 738.8 446 86.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 3.2e-211 738.4 442 86.7
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.0e-206 720.3 398 91.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.0e-205 719.2 398 91.5
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 2.5e-200 702.2 443 81.7
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 4.8e-199 698.0 442 82.4
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.4e-198 695.7 443 81.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 81.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.0e-198 694.9 441 81.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.9e-198 694.1 445 79.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.0e-198 693.7 443 81.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-197 693.0 445 79.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.0e-197 692.6 441 81.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.0e-197 692.6 443 80.1
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.0e-196 690.3 441 81.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 80.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.4e-195 686.4 443 81.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.9e-195 686.0 443 80.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 5.5e-195 684.5 444 80.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 9.3e-195 683.7 443 79.5
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.3e-195 683.7 443 79.5
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.2e-194 683.3 446 79.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.2e-194 683.3 443 79.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.2e-194 683.3 443 80.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-194 682.9 443 79.9
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.6e-194 682.9 441 78.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.1e-194 682.6 443 80.6
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 443 80.6
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.7e-194 682.2 444 80.4
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 4.6e-194 681.4 443 80.1
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.6e-194 681.4 443 80.8
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.6e-194 681.4 443 79.7
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.6e-194 681.4 444 80.0
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 6.0e-194 681.0 443 78.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.1e-193 677.9 441 79.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.1e-193 677.9 443 78.8
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.7e-193 677.2 444 79.3
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.9e-192 676.0 442 78.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.3e-192 674.9 441 78.7
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 5.7e-192 674.5 442 78.7
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 5.7e-192 674.5 441 78.0
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.7e-192 673.7 443 78.3
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-191 672.9 443 78.1
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-191 672.9 443 78.1
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.2e-191 672.5 441 78.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.2e-191 672.5 443 77.7
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.7e-191 671.8 441 78.5
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.7e-191 671.8 442 78.5
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 3.7e-191 671.8 442 78.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 4.8e-191 671.4 442 79.2
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.3e-191 671.0 445 77.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.1e-190 670.2 441 78.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.4e-190 669.8 441 78.9
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.8e-190 669.5 442 77.8
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 4.1e-190 668.3 441 78.9
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 4.1e-190 668.3 441 78.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 5.3e-190 667.9 441 78.7
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.3e-190 667.9 443 77.9
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 6.9e-190 667.5 426 79.6
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 9.0e-190 667.2 443 76.3
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.5e-189 666.4 441 77.6
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.6e-189 665.6 441 78.2
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.6e-189 665.6 441 77.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.4e-189 665.2 443 77.0
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 3.4e-189 665.2 441 77.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 5.9e-189 664.5 446 77.8
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.0e-188 663.7 441 77.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.3e-188 663.3 443 77.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.2e-188 662.5 430 77.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.9e-188 662.1 444 77.9
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.9e-188 662.1 441 77.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.8e-188 661.8 446 76.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.0e-188 661.4 441 78.5
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 5.0e-188 661.4 443 76.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.4e-187 659.8 442 77.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.4e-187 659.8 443 77.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.9e-187 659.4 405 82.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.5e-187 659.1 443 74.7
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 3.2e-187 658.7 442 78.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.2e-187 658.7 441 77.8
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.2e-186 656.8 442 78.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.6e-186 656.4 441 78.5
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.1e-186 656.0 439 76.3
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.6e-186 654.8 442 77.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.6e-186 654.8 443 76.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.1e-186 654.4 441 76.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 6.1e-186 654.4 441 76.6
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 7.9e-186 654.1 441 76.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.9e-185 651.7 402 81.6
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 8.8e-185 650.6 404 81.7
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-184 648.7 441 76.4
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.3e-184 648.7 441 76.4
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 9.7e-184 647.1 441 76.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 9.7e-184 647.1 443 75.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 9.7e-184 647.1 439 75.2
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-183 646.4 441 76.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-183 646.0 443 75.8
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.2e-183 646.0 441 75.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.8e-183 645.6 394 82.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.8e-183 645.6 394 82.0
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.5e-181 638.3 379 83.4
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 7.7e-181 637.5 442 76.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.2e-180 636.0 379 83.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 6.5e-180 634.4 376 83.8
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.1e-179 633.6 419 77.6
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.9e-179 632.9 446 74.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.6e-178 629.8 451 73.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.0e-177 627.1 397 79.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-176 623.6 375 81.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.5e-176 623.2 463 70.8
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.2e-175 619.4 483 68.3
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.4e-174 616.7 515 65.2
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.1e-174 615.5 427 74.5
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.8e-172 608.6 388 80.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.0e-172 608.2 427 73.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.9e-171 606.3 443 72.7
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 3.0e-169 599.0 441 72.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.2e-163 578.6 385 78.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.3e-160 568.9 443 68.8
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.0e-156 557.4 377 77.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.1e-155 553.9 394 74.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 381 69.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.9e-148 529.3 371 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 3.8e-148 528.9 397 66.8
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 8.6e-148 527.7 365 75.3
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 4.7e-146 521.9 363 69.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.7e-143 513.5 393 64.1
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.2e-143 513.1 302 84.8
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.7e-143 512.3 403 62.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.7e-143 512.3 425 63.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.4e-142 510.4 381 67.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 9.2e-142 507.7 366 65.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.5e-141 505.4 374 67.1
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-140 503.4 434 61.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 6.6e-140 501.5 361 70.1
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-138 497.3 389 64.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.1e-138 496.5 369 68.0
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.0e-134 481.5 396 58.8
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.7e-130 468.8 360 64.4
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.1e-129 467.6 396 58.1
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.7e-127 459.1 317 74.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 4.6e-117 425.6 365 61.1
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-99 367.1 366 55.2
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.9e-93 345.1 297 60.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.0e-81 306.2 215 72.1
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.6e-69 266.2 329 43.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-66 258.1 185 74.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.7e-58 229.9 199 59.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.4e-57 227.3 123 85.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-56 224.6 138 81.9
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.0e-55 221.9 160 69.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.0e-40 171.0 162 54.9
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.8e-36 157.9 119 66.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.8e-34 150.6 111 73.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 4.5e-32 143.3 81 87.7
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.6e-30 136.3 160 45.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 8.9e-28 129.0 78 82.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.5e-27 125.9 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.2e-19 102.1 73 60.3
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.7e-18 98.2 53 81.1
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.7e-16 90.9 95 51.6
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 6.6e-07 59.7 36 77.8


User provided reference genes

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