Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1759.6 870 100.0
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1538.1 870 87.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1517.3 870 86.2
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1452.6 870 83.8
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1409.8 873 80.8
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1367.8 870 78.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 870 78.5
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1365.9 870 79.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 870 78.4
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1358.6 870 79.0
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1357.8 869 77.7
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 870 77.1
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1345.1 870 76.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1343.6 870 76.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 870 77.2
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 796 83.7
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 870 77.2
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 870 77.1
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 870 76.7
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 871 76.5
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 900 75.6
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 932 73.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1328.5 870 77.1
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 872 76.5
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 872 76.3
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1324.3 870 75.6
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 871 75.7
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 871 75.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 872 76.0
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 870 76.1
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 870 75.7
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 858 77.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 870 76.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 862 76.8
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 870 75.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1318.1 870 75.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 870 75.1
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 870 76.6
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 870 75.2
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 871 76.2
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 870 76.0
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 870 76.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 871 76.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 870 74.9
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 890 75.3
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 877 74.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 870 75.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 877 74.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 870 74.8
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 871 74.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 870 74.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 871 75.5
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 871 75.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 870 75.5
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 877 74.5
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 870 75.6
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 870 76.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 870 74.0
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1304.3 870 74.4
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 872 75.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 870 74.0
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 995 68.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1298.5 870 75.7
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 870 74.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 871 74.6
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 876 75.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 870 74.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 870 74.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 870 74.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 870 74.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1285.0 875 73.7
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 871 74.7
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1276.9 943 69.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 872 74.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 871 73.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1272.3 936 70.2
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1265.4 870 72.3
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1259.2 943 69.2
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 899 71.3
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1247.6 813 75.4
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1244.6 883 72.9
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1238.0 858 72.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1234.6 874 72.8
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1230.3 857 72.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1223.4 798 76.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 870 71.0
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1209.9 797 75.8
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1208.0 874 71.7
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1193.7 783 77.0
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 808 74.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1179.1 871 68.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 871 70.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 820 73.3
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1173.3 870 69.3
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1171.8 891 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 849 67.3
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1125.2 876 65.3
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1113.2 780 70.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 871 66.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1102.8 870 66.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1097.0 884 63.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 718 75.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1083.2 729 74.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1081.2 872 63.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.2e-307 1059.7 881 62.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 4.4e-297 1024.6 686 74.5
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.4e-273 944.9 877 60.1
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 5.6e-252 874.8 645 70.7
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.5e-238 828.9 546 74.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.8e-219 766.1 517 74.3
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 7.9e-198 694.9 446 77.8
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.1e-154 549.7 357 77.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.1e-118 429.1 311 67.5
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 3.3e-111 407.1 285 71.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-111 406.8 328 67.1
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.6e-110 404.8 282 73.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 3.2e-90 337.4 194 84.0
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.7e-87 326.6 263 65.0
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.7e-79 300.1 416 44.7
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 6.1e-65 253.4 182 71.4
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.1e-61 241.1 303 48.2
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.5e-50 203.0 140 70.0
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-48 198.7 167 64.7
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 6.1e-41 173.7 117 75.2
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.9e-34 152.1 98 79.6
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 3.1e-32 144.8 82 84.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 5.8e-31 140.6 176 45.5
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 5.4e-29 134.0 101 65.3
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.3e-27 128.6 82 81.7
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.8e-25 121.7 76 75.0
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.2e-22 112.1 84 63.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 8.3e-22 110.2 74 71.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.1e-21 109.8 63 82.5
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.9e-18 99.0 75 68.0
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.2e-14 85.5 106 56.6
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 7.3e-10 70.5 50 66.0
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.3e-10 70.5 42 88.1
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 2.2e-06 58.9 76 36.8


User provided reference genes

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