Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 3.3e-201 704.9 372 100.0
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.9e-88 329.7 378 51.3
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 7.1e-87 325.1 384 50.5
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 5.4e-63 245.7 296 44.9
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.1e-34 151.8 262 42.0
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.3e-27 128.3 192 43.8
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.1e-26 123.6 170 45.9
EL10Ac4g08760 Beta vulgaris HOM05D005305 ORTHO05D006394 4.5e-25 119.8 83 66.3
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 1.3e-24 118.2 195 40.0
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.3e-24 118.2 156 48.1
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.7e-24 117.9 195 41.5
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.5e-23 114.0 152 45.4
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.5e-23 112.8 156 46.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 7.2e-23 112.5 161 43.5
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 1.2e-22 111.7 202 40.1
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.2e-22 111.7 163 41.1
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 2.7e-22 110.5 153 42.5
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 3.6e-22 110.2 156 46.8
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.6e-22 110.2 189 38.6
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 8.0e-22 109.0 153 41.2
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.4e-21 108.2 158 40.5
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.4e-21 108.2 162 38.9
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.8e-21 107.8 156 46.2
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.8e-21 107.8 156 46.2
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.8e-21 107.8 156 46.2
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.8e-21 107.8 213 34.7
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 1.8e-21 107.8 201 36.3
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 2.3e-21 107.5 159 39.6
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 2.3e-21 107.5 198 36.9
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 3.9e-21 106.7 157 39.5
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 3.9e-21 106.7 227 34.8
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 5.2e-21 106.3 171 40.4
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.1e-20 105.1 149 45.6
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 3.3e-20 103.6 199 34.2
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 7.4e-20 102.4 161 36.6
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 7.4e-20 102.4 161 36.6
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 2.8e-19 100.5 150 44.0
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 3.7e-19 100.1 170 35.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 4.8e-19 99.8 149 40.9
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 4.8e-19 99.8 186 33.9
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 6.3e-19 99.4 208 37.5
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 8.2e-19 99.0 160 44.4
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.1e-18 98.6 143 40.6
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.1e-18 98.6 143 40.6
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 2.4e-18 97.4 161 36.0
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 3.1e-18 97.1 150 45.3
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 3.1e-18 97.1 143 39.9
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 4.1e-18 96.7 296 30.7
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 5.3e-18 96.3 155 37.4
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 9.1e-18 95.5 151 36.4
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.6e-17 94.7 153 36.6
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 1.6e-17 94.7 190 34.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.6e-17 94.7 209 33.5
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 2.0e-17 94.4 205 33.7
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 2.6e-17 94.0 172 35.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 2.6e-17 94.0 157 38.9
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 3.5e-17 93.6 199 33.7
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 3.5e-17 93.6 170 34.7
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 4.5e-17 93.2 158 38.0
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 5.9e-17 92.8 211 35.5
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 5.9e-17 92.8 214 31.8
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 5.9e-17 92.8 152 37.5
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 5.9e-17 92.8 144 38.2
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 7.7e-17 92.4 168 35.7
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 7.7e-17 92.4 244 31.1
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.0e-16 92.0 211 34.6
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.0e-16 92.0 233 33.0
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.3e-16 91.7 211 35.1
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-16 90.9 154 39.6
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.2e-16 90.9 154 39.6
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.2e-16 90.9 144 36.1
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.9e-16 90.5 211 35.1
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 2.9e-16 90.5 211 34.1
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 3.8e-16 90.1 231 31.2
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 3.8e-16 90.1 171 32.7
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 8.5e-16 89.0 168 37.5
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 8.5e-16 89.0 159 38.4
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.1e-15 88.6 155 37.4
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.1e-15 88.6 211 33.6
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 1.5e-15 88.2 159 36.5
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.9e-15 87.8 168 38.1
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.9e-15 87.8 166 38.0
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.2e-15 86.7 197 33.5
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 5.5e-15 86.3 152 37.5
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 7.2e-15 85.9 158 36.1
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 9.4e-15 85.5 152 36.8
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 9.4e-15 85.5 154 37.7
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 1.6e-14 84.7 151 36.4
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 2.1e-14 84.3 158 34.8
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 2.1e-14 84.3 152 36.2
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.7e-14 84.0 219 31.5
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.7e-14 84.0 219 31.5
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.7e-14 84.0 219 31.5
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.6e-14 83.6 146 39.0
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 4.7e-14 83.2 215 34.4
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.1e-14 82.8 200 32.0
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 8.0e-14 82.4 148 33.8
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.8e-13 81.3 196 30.6
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 2.3e-13 80.9 133 39.8
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.0e-13 80.5 91 51.6
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 5.2e-13 79.7 155 34.8
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 8.8e-13 79.0 148 35.8
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.2e-12 78.6 154 37.0
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.5e-12 78.2 148 36.5
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.7e-12 75.5 161 34.8
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 2.8e-11 73.9 181 33.1
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.8e-11 73.9 165 35.2
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 8.2e-11 72.4 165 35.2
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.6e-09 68.2 119 35.3
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 4.5e-09 66.6 165 33.3
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.5e-08 62.8 111 36.9
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.5e-07 61.6 126 31.0
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.9e-07 61.2 126 30.2
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.2e-07 60.5 116 33.6
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 4.2e-07 60.1 96 37.5
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 4.2e-07 60.1 70 38.6
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.2e-07 60.1 111 36.9
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 4.2e-07 60.1 138 30.4
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 7.2e-07 59.3 95 38.9
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.4e-07 58.9 66 43.9
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.2e-06 58.5 119 35.3
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.6e-06 58.2 69 42.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.1e-06 57.8 73 37.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.1e-06 57.8 101 35.6
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-06 57.4 91 37.4
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.7e-06 57.4 72 36.1
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 3.6e-06 57.0 91 37.4
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-06 57.0 94 37.2
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 3.6e-06 57.0 123 31.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 3.6e-06 57.0 123 31.7
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 4.7e-06 56.6 124 30.6
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 6.1e-06 56.2 118 33.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 6.1e-06 56.2 118 33.1
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 6.1e-06 56.2 118 33.1
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 8.0e-06 55.8 69 42.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 8.0e-06 55.8 69 42.0
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 8.0e-06 55.8 97 34.0
Pp3c3_3640 Physcomitrium patens HOM05D022662 ORTHO05D006223 8.0e-06 55.8 109 30.3


User provided reference genes

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