Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 4.4e-74 281.2 140 100.0
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.5e-61 239.6 133 86.5
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.6e-61 237.7 135 83.7
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 7.5e-58 227.3 139 79.1
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 4.9e-57 224.6 138 73.9
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 8.3e-57 223.8 137 76.6
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.2e-56 221.9 137 78.1
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.2e-56 221.9 137 75.9
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 5.4e-56 221.1 137 75.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.7e-55 218.8 137 74.5
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.7e-55 218.8 137 75.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.7e-55 218.8 137 73.0
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 4.6e-55 218.0 137 74.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.6e-55 218.0 137 75.9
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 73.7
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 73.7
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 73.7
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 73.7
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 73.7
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 6.0e-55 217.6 137 75.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 7.8e-55 217.2 137 73.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 7.8e-55 217.2 137 73.7
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.8e-55 217.2 137 73.7
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.0e-54 216.9 137 74.5
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.7e-54 216.1 138 73.2
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.3e-54 215.7 135 73.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.3e-54 215.7 138 74.6
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.1e-54 214.5 137 74.5
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 5.1e-54 214.5 137 70.8
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 6.6e-54 214.2 137 70.1
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.6e-54 214.2 137 73.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.9e-53 212.6 137 72.3
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.3e-53 211.5 137 69.3
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.3e-53 211.5 137 72.3
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.6e-53 211.1 137 69.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 9.5e-53 210.3 137 70.8
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.5e-53 210.3 138 70.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.2e-52 209.9 138 72.5
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.2e-52 209.9 139 71.9
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.6e-52 209.5 137 71.5
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.8e-52 208.8 137 70.8
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-52 208.4 137 71.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-52 208.4 136 72.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.7e-52 208.0 137 71.5
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.7e-52 208.0 139 71.2
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.7e-52 208.0 139 71.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 6.2e-52 207.6 138 69.6
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-51 206.8 137 70.8
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-51 206.8 137 70.8
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-51 206.8 137 70.8
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.8e-51 206.1 137 70.8
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.3e-51 205.7 137 72.3
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.3e-51 205.7 137 71.5
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.1e-51 205.3 137 70.8
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.1e-51 205.3 163 62.6
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 8.9e-51 203.8 137 69.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.5e-50 203.0 132 72.0
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.0e-50 202.6 138 69.6
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.6e-50 202.2 138 70.3
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 3.4e-50 201.8 137 69.3
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 5.8e-50 201.1 137 68.6
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.8e-50 201.1 136 66.2
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.6e-50 200.7 126 75.4
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 7.6e-50 200.7 138 66.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 9.9e-50 200.3 137 67.2
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.9e-49 198.7 137 65.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.8e-49 198.4 140 67.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 4.9e-49 198.0 137 67.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 6.4e-49 197.6 137 65.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 8.4e-49 197.2 159 61.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 8.4e-49 197.2 137 68.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-48 196.8 127 72.4
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.1e-48 196.8 137 71.5
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-48 196.8 137 70.1
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 4.1e-48 194.9 174 56.9
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 5.4e-48 194.5 137 64.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 5.4e-48 194.5 137 67.2
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.4e-48 194.5 137 67.9
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 7.1e-48 194.1 137 63.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 7.1e-48 194.1 137 63.5
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 7.1e-48 194.1 137 64.2
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 7.1e-48 194.1 124 71.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.2e-47 193.4 138 66.7
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.6e-47 193.0 136 66.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.6e-47 193.0 137 63.5
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-47 193.0 137 66.4
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.1e-47 192.6 137 64.2
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.7e-47 192.2 137 63.5
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 3.5e-47 191.8 138 65.2
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 4.6e-47 191.4 137 63.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 6.0e-47 191.0 137 65.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.0e-47 191.0 137 63.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.0e-46 190.3 137 65.0
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.3e-46 189.9 138 65.2
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 6.6e-46 187.6 137 62.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-45 186.8 136 64.7
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-45 186.8 137 60.6
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.5e-45 186.4 137 61.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.3e-45 185.3 130 66.9
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 3.3e-45 185.3 122 70.5
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 4.3e-45 184.9 136 60.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.2e-44 183.3 130 66.2
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.8e-43 179.5 137 62.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.8e-43 179.5 142 64.8
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.0e-42 176.0 123 65.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 7.6e-42 174.1 139 58.3
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.2e-40 168.7 137 57.7
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.0e-39 164.5 138 56.5
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.8e-39 164.1 138 55.1
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-37 159.8 138 55.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.5e-37 159.1 137 54.0
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 9.6e-37 157.1 135 63.7
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.3e-36 156.8 91 76.9
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 4.5e-34 148.3 89 74.2
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 9.9e-34 147.1 95 69.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.8e-33 145.2 89 75.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 6.4e-33 144.4 89 73.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.6e-31 139.8 91 70.3
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-30 136.7 89 68.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.3e-30 136.0 88 69.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-29 133.7 113 59.3
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.6e-29 131.3 138 52.2
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.6e-28 129.8 138 45.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.6e-28 129.8 89 67.4
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-28 129.8 145 46.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 4.5e-26 121.7 135 45.2
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 7.6e-26 120.9 130 46.9
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 7.6e-26 120.9 137 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 9.9e-26 120.6 135 41.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 6.4e-25 117.9 71 76.1
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 6.4e-25 117.9 91 59.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 6.4e-25 117.9 93 55.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 9.6e-21 104.0 71 67.6
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.6e-20 103.2 62 79.0
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.1e-20 102.8 100 48.0
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.8e-20 101.7 70 65.7
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 6.2e-20 101.3 95 60.0
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.4e-19 100.1 136 42.6
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.6e-18 95.9 97 48.5
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.6e-18 95.9 97 48.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.6e-18 95.9 97 48.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.6e-18 94.4 133 40.6
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-14 83.6 59 64.4
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 3.9e-14 82.0 52 61.5
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-13 80.1 71 56.3
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.6e-12 76.6 53 73.6
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.0e-11 70.9 47 72.3
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 9.0e-11 70.9 47 72.3
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-10 70.1 60 56.7
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-09 67.0 58 51.7
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.3e-09 67.0 51 64.7
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 5.5e-08 61.6 46 65.2
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.9e-06 55.5 39 71.8


User provided reference genes

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