Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.6e-78 296.2 169 100.0
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.0e-44 183.0 174 66.7
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 9.8e-36 154.1 185 56.2
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 6.8e-29 131.3 180 51.7
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.8e-22 109.4 169 45.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.7e-19 100.1 173 43.4
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.9e-19 99.4 166 44.6
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.4e-18 97.1 179 50.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.4e-18 96.3 171 43.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 3.2e-18 95.9 183 48.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 9.2e-18 94.4 179 40.8
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 3.5e-17 92.4 185 49.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.3e-16 90.5 173 53.2
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.7e-16 90.1 191 45.5
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.6e-16 88.2 188 41.5
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.9e-15 86.7 166 43.4
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 3.3e-15 85.9 199 41.2
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 4.3e-15 85.5 163 49.1
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.3e-15 85.5 169 46.7
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 4.3e-15 85.5 182 45.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.6e-15 85.1 188 41.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 7.3e-15 84.7 187 43.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.3e-15 84.7 188 39.9
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 7.3e-15 84.7 192 41.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.1e-14 83.2 174 39.7
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.6e-14 82.4 173 39.9
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.6e-14 82.4 196 42.3
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.7e-14 82.0 174 39.1
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 4.7e-14 82.0 186 43.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.2e-14 81.6 186 39.2
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.2e-14 81.6 186 39.2
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 8.1e-14 81.3 170 37.1
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-13 80.5 177 39.0
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.1e-13 79.3 189 46.0
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.1e-13 79.3 147 42.2
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.1e-13 79.3 185 39.5
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 4.0e-13 79.0 179 40.2
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 5.2e-13 78.6 192 39.1
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.2e-13 78.6 180 42.8
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.2e-13 78.6 176 38.1
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 8.9e-13 77.8 190 37.9
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.4e-12 75.9 173 42.8
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 3.4e-12 75.9 204 40.2
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.4e-12 75.5 187 35.8
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 9.9e-12 74.3 183 38.3
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 9.9e-12 74.3 177 37.9
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.3e-11 73.9 177 36.7
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-11 73.2 183 39.3
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.2e-11 73.2 183 39.3
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.2e-11 73.2 190 38.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.2e-11 73.2 188 41.0
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 2.2e-11 73.2 198 41.4
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.9e-11 72.8 141 47.5
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 3.7e-11 72.4 184 35.9
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 3.7e-11 72.4 163 41.7
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.9e-11 72.0 196 37.8
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 4.9e-11 72.0 196 37.8
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.9e-11 72.0 196 37.8
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 4.9e-11 72.0 192 35.4
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 4.9e-11 72.0 164 37.2
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.4e-11 71.6 178 37.1
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 8.3e-11 71.2 140 48.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 8.3e-11 71.2 154 44.2
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-10 70.9 176 42.0
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.1e-10 70.9 177 37.3
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-10 70.5 196 37.8
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-10 70.5 196 37.8
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-10 70.5 151 47.7
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.4e-10 70.5 177 39.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.4e-10 70.5 183 36.1
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-10 70.5 182 37.4
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-10 70.1 193 36.3
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.9e-10 70.1 193 36.3
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.9e-10 70.1 177 38.4
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.9e-10 70.1 175 37.1
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-10 69.7 180 36.7
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-10 69.7 180 36.7
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.2e-10 69.3 178 35.4
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-10 68.9 196 36.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-10 68.9 183 36.1
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-10 68.9 183 39.3
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 4.1e-10 68.9 183 36.1
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 4.1e-10 68.9 183 36.1
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 5.4e-10 68.6 188 36.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 5.4e-10 68.6 184 39.1
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 5.4e-10 68.6 182 39.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 7.1e-10 68.2 179 36.9
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 7.1e-10 68.2 182 36.8
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 9.2e-10 67.8 193 36.3
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-09 67.4 182 36.3
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.2e-09 67.4 177 41.8
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.2e-09 67.4 184 38.6
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-09 67.0 153 37.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.1e-09 66.6 183 35.5
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-09 66.6 173 35.3
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.7e-09 66.2 193 36.8
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.7e-09 66.2 193 36.8
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.7e-09 66.2 176 36.4
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.7e-09 66.2 184 36.4
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 6.0e-09 65.1 172 40.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 6.0e-09 65.1 188 36.7
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.0e-09 65.1 175 42.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 6.0e-09 65.1 156 41.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 6.0e-09 65.1 158 45.6
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 7.8e-09 64.7 169 34.3
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 7.8e-09 64.7 188 34.0
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 7.8e-09 64.7 181 33.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.3e-08 63.9 127 47.2
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.3e-08 63.9 179 42.5
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.7e-08 63.5 125 38.4
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 3.9e-08 62.4 192 37.5
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 5.1e-08 62.0 183 33.3
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 5.1e-08 62.0 183 33.3
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 5.1e-08 62.0 187 35.8
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 5.1e-08 62.0 133 39.1
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 8.6e-08 61.2 77 51.9
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-07 60.8 171 32.7
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.5e-07 60.5 181 42.5
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.9e-07 60.1 182 37.4
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.5e-07 59.7 168 33.9
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 2.5e-07 59.7 183 32.8
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 2.5e-07 59.7 183 32.8
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.3e-07 58.9 127 39.4
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.3e-07 58.9 73 50.7
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-07 58.9 193 34.7
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 7.3e-07 58.2 115 42.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-06 57.4 75 52.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-06 57.0 73 46.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.1e-06 56.6 166 38.6
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.6e-06 55.8 174 35.6
Duzib268G0137 Durio zibethinus HOM05D002253 ORTHO05D002351 4.7e-06 55.5 162 31.5
Manes.14G101400 Manihot esculenta HOM05D002253 ORTHO05D002351 4.7e-06 55.5 156 35.9
Thecc.02G356300 Theobroma cacao HOM05D002253 ORTHO05D002351 4.7e-06 55.5 166 31.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 6.2e-06 55.1 70 47.1


User provided reference genes

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