Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 7.2e-103 377.5 225 100.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.0e-53 212.2 233 57.1
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.5e-44 183.7 241 56.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.2e-41 174.1 233 49.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 4.6e-41 172.2 229 48.9
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.8e-38 162.2 234 46.6
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.2e-38 161.4 226 46.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-37 161.0 227 48.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.4e-37 159.8 226 46.0
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.4e-37 159.8 230 48.3
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 9.0e-37 157.9 225 48.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 9.0e-37 157.9 160 55.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 9.0e-37 157.9 232 56.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 2.0e-36 156.8 231 45.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.4e-36 156.0 240 42.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 7.6e-36 154.8 227 46.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.2e-35 153.3 226 46.5
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.1e-34 151.0 226 46.5
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.9e-34 150.2 230 45.2
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.5e-34 149.8 243 42.4
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.5e-34 149.8 222 46.4
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-34 149.8 222 56.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.5e-34 148.7 228 44.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 9.3e-34 147.9 226 45.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 9.3e-34 147.9 220 49.5
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.1e-33 146.7 227 44.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.1e-33 146.7 216 45.8
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.7e-33 146.4 226 49.1
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 2.7e-33 146.4 232 44.8
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.5e-33 146.0 234 43.6
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.5e-33 146.0 234 43.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.5e-33 146.0 233 42.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.5e-33 146.0 219 46.6
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.5e-33 146.0 219 41.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.6e-33 145.6 227 48.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.6e-33 145.6 217 43.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 7.9e-33 144.8 217 46.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 7.9e-33 144.8 225 45.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-32 144.4 226 46.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.3e-32 144.1 218 45.9
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.8e-32 143.7 230 45.2
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.8e-32 143.7 145 57.9
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-32 143.7 146 54.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.0e-32 142.9 222 49.1
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.9e-32 142.5 217 52.5
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 3.9e-32 142.5 225 41.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.1e-32 142.1 145 56.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.7e-32 141.7 227 42.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 8.7e-32 141.4 217 45.2
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 8.7e-32 141.4 217 45.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-31 141.0 226 45.6
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.5e-31 140.6 224 44.2
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.5e-31 139.8 226 42.5
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.7e-31 138.7 226 44.2
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.7e-31 137.9 226 43.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.3e-30 137.5 217 42.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.3e-30 137.5 222 44.1
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.2e-30 136.7 233 42.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.8e-30 136.3 223 43.9
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.7e-30 136.0 264 37.1
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.7e-30 136.0 237 43.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 4.8e-30 135.6 226 43.8
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.4e-29 134.0 147 55.8
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.4e-29 133.3 217 41.0
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.4e-29 133.3 228 41.2
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.1e-29 132.5 229 41.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.3e-29 132.1 146 50.7
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 9.0e-29 131.3 248 42.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.2e-28 131.0 226 40.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.5e-28 130.6 229 53.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.5e-28 130.6 223 40.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-28 130.6 218 44.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 3.4e-28 129.4 222 41.9
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 4.5e-28 129.0 223 43.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.5e-28 129.0 252 40.5
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.5e-28 129.0 218 42.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 5.9e-28 128.6 236 39.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.7e-28 128.3 145 52.4
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.0e-27 127.9 231 38.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.2e-27 126.7 217 39.6
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.2e-27 126.7 230 42.2
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.9e-27 126.3 155 49.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.9e-27 126.3 217 39.2
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.8e-27 125.9 236 39.0
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.8e-27 125.9 156 49.4
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-27 125.6 146 47.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 5.0e-27 125.6 219 41.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 6.5e-27 125.2 217 41.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.5e-27 124.8 218 39.4
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 8.5e-27 124.8 221 38.5
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-26 124.4 240 47.9
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-26 124.4 229 38.9
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.1e-26 124.4 149 47.0
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-26 123.2 136 47.1
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-26 123.2 136 47.1
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.2e-26 122.9 139 50.4
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 4.2e-26 122.5 146 47.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 7.2e-26 121.7 231 39.0
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 9.4e-26 121.3 225 37.3
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 9.4e-26 121.3 223 38.1
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-26 121.3 217 38.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-26 121.3 228 38.6
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-26 121.3 228 38.6
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-25 120.9 223 36.3
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-25 120.9 146 46.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-25 120.6 234 41.9
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.1e-25 120.2 217 36.9
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.7e-25 119.8 223 39.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 4.6e-25 119.0 223 36.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.4e-24 117.5 224 36.6
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.8e-24 117.1 224 42.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-24 116.7 227 37.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.0e-24 116.3 225 37.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.0e-24 116.3 148 44.6
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.8e-24 114.8 136 45.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-23 114.4 230 34.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-23 114.0 217 37.8
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-23 113.6 218 36.7
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.0e-23 113.6 217 37.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.5e-23 113.2 159 43.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 2.5e-23 113.2 221 36.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.3e-23 112.8 153 44.4
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.7e-23 112.1 216 38.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 5.7e-23 112.1 223 34.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 5.7e-23 112.1 136 50.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 7.4e-23 111.7 136 47.8
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.7e-23 111.3 154 47.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-22 110.9 217 37.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.3e-22 110.9 227 41.4
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.7e-22 109.4 225 34.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 4.8e-22 109.0 140 46.4
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-22 109.0 142 44.4
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.2e-22 108.2 144 43.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-21 107.5 238 34.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-21 107.1 142 42.3
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-21 107.1 142 42.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.8e-21 107.1 241 35.7
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.8e-21 107.1 142 42.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.4e-21 106.7 137 43.8
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 2.4e-21 106.7 234 37.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 3.1e-21 106.3 147 42.2
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.1e-21 106.3 233 42.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.1e-21 106.3 142 45.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.1e-21 106.3 137 41.6
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.0e-20 103.6 218 34.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.4e-20 102.8 223 37.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 3.4e-20 102.8 255 34.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.7e-20 101.7 217 40.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-19 99.8 142 42.3
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 6.5e-19 98.6 143 41.3
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-18 97.8 221 34.4
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-18 97.4 142 40.1
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-18 97.4 163 40.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.2e-18 95.9 223 33.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 4.7e-17 92.4 142 38.7
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 8.8e-16 88.2 141 41.8
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 8.8e-16 88.2 141 41.8
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-15 87.0 142 35.9
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.0e-15 87.0 142 35.9
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.3e-14 84.3 166 41.6
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.2e-14 83.6 165 37.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.8e-13 80.5 248 31.9
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-13 78.2 162 35.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.5e-12 75.9 136 44.1
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-11 74.3 136 43.4
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.5e-11 71.6 138 34.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.1e-10 71.2 138 33.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-10 71.2 136 41.9
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.1e-10 71.2 125 36.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 7.2e-10 68.6 142 31.0
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-09 67.0 41 65.9
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.1e-09 67.0 129 32.6
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.1e-09 65.5 134 33.6
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 8.0e-09 65.1 224 28.6
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.0e-08 62.8 39 66.7
SEGI_03464 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.0e-08 62.8 152 34.9
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 8.8e-08 61.6 155 31.6
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 5.7e-07 58.9 150 30.7
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 5.7e-07 58.9 169 27.8
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 7.5e-07 58.5 48 60.4
Pp3c17_5610 Physcomitrium patens HOM05D022619 ORTHO05D026045 7.5e-07 58.5 169 26.6
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 2.2e-06 57.0 145 29.7
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.8e-06 55.8 135 30.4


User provided reference genes

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