Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.1e-93 345.5 157 100.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 3.9e-79 298.1 157 86.6
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.4e-73 279.6 158 82.3
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 9.3e-73 276.9 164 78.0
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 3.6e-56 221.9 150 67.3
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.9e-56 220.7 152 66.4
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.9e-56 220.7 152 65.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 3.9e-55 218.4 150 66.7
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.1e-54 216.9 150 67.3
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.5e-54 216.5 154 64.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.5e-54 215.7 150 64.7
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.3e-54 215.3 150 64.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.3e-54 215.3 150 64.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 3.3e-54 215.3 150 64.0
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.3e-54 215.3 154 64.9
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.3e-54 214.9 150 66.0
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.7e-54 214.5 151 64.2
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.7e-54 213.8 158 63.3
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 9.7e-54 213.8 151 64.2
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.3e-53 213.4 150 64.0
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.6e-53 213.0 150 64.7
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 8.2e-53 210.7 150 64.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.8e-52 209.5 151 64.2
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.8e-52 209.5 151 64.2
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.4e-52 209.1 150 64.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.4e-52 209.1 148 64.9
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.1e-52 208.8 148 64.2
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 5.3e-52 208.0 150 63.3
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 5.3e-52 208.0 153 62.1
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 9.1e-52 207.2 156 62.2
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 9.1e-52 207.2 161 59.0
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.2e-51 206.8 150 62.0
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.2e-51 206.8 153 61.4
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.2e-51 206.8 154 59.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.5e-51 206.5 156 62.2
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.5e-51 206.5 155 60.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.5e-51 206.5 154 59.1
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.0e-51 206.1 148 62.8
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 2.0e-51 206.1 150 62.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.6e-51 205.7 153 61.4
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.6e-51 205.7 150 62.7
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 2.6e-51 205.7 151 63.6
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.4e-51 205.3 150 60.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.4e-51 205.3 148 62.8
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 5.9e-51 204.5 150 62.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 5.9e-51 204.5 150 62.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 7.7e-51 204.1 154 61.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.7e-51 204.1 150 60.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.0e-50 203.8 147 63.3
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.2e-50 202.6 148 60.8
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.2e-50 202.6 148 60.8
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.9e-50 202.2 146 63.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 3.8e-50 201.8 151 62.3
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 5.0e-50 201.4 167 55.7
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 5.0e-50 201.4 150 62.0
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.1e-49 200.3 150 62.7
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 1.1e-49 200.3 127 68.5
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.4e-49 199.9 120 70.0
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.9e-49 199.5 150 61.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.9e-49 199.5 125 69.6
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.5e-49 199.1 148 61.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 5.5e-49 198.0 123 69.1
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.2e-49 197.6 150 60.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 7.2e-49 197.6 154 58.4
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.4e-49 197.2 150 60.7
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.2e-48 196.8 149 59.7
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.6e-48 196.4 121 71.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.1e-48 196.1 150 61.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 3.6e-48 195.3 120 68.3
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 3.6e-48 195.3 120 68.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.6e-48 195.3 120 67.5
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.6e-48 194.9 150 58.0
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 4.6e-48 194.9 150 60.0
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 6.1e-48 194.5 120 68.3
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.3e-47 192.6 120 68.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.0e-47 192.2 120 67.5
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.0e-47 192.2 151 58.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.0e-47 192.2 120 67.5
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.0e-47 192.2 151 58.3
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.9e-47 191.8 150 60.7
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.9e-47 191.8 150 60.7
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 3.9e-47 191.8 118 70.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.1e-47 191.4 150 60.7
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.1e-47 191.4 155 60.0
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.1e-47 191.4 155 60.0
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 6.7e-47 191.0 120 66.7
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 6.7e-47 191.0 151 57.6
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 6.7e-47 191.0 150 58.7
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.1e-46 190.3 120 66.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.1e-46 190.3 151 59.6
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.1e-46 190.3 150 56.0
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.5e-46 189.9 120 65.8
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.5e-46 189.9 120 67.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.0e-46 189.5 151 59.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 4.4e-46 188.3 120 65.8
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.7e-46 188.0 151 58.9
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.3e-45 186.8 120 66.7
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.7e-45 185.3 127 63.8
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.8e-44 183.0 150 56.7
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 5.3e-44 181.4 125 64.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 4.5e-43 178.3 158 55.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 7.7e-43 177.6 115 68.7
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.0e-42 177.2 152 53.3
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.3e-42 176.8 147 55.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.8e-42 175.3 147 55.1
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.5e-42 174.5 146 56.2
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 8.5e-42 174.1 150 53.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.2e-41 172.2 150 53.3
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 3.6e-40 168.7 123 61.8
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.1e-38 163.7 175 49.1
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.2e-35 153.7 181 45.3
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.8e-31 139.8 116 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.0e-31 138.7 123 48.0
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 8.8e-31 137.5 125 52.0
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.2e-30 137.1 157 45.2
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 8.2e-29 131.0 127 47.2
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.3e-28 128.3 87 64.4
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.0e-26 124.0 72 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.2e-25 117.9 132 42.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.0e-22 109.8 56 80.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 9.8e-22 107.5 55 76.4
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.7e-18 96.7 127 44.1
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-14 83.6 84 45.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.4e-14 82.4 83 51.8
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 6.3e-13 78.2 83 43.4
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.0e-12 74.7 83 43.4
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.2e-11 73.9 114 36.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-11 73.6 56 50.0
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.9e-09 66.6 74 47.3
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-09 65.9 102 34.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 8.0e-08 61.2 86 40.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 8.9e-07 57.8 50 46.0
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.2e-06 57.4 62 50.0
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.4e-06 55.8 111 29.7


User provided reference genes

Program Settings