Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 2.3e-123 446.0 313 100.0
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 8.9e-59 231.5 305 68.5
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 2.6e-34 150.2 195 54.4
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 7.6e-34 148.7 302 42.4
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.9e-33 146.7 305 41.0
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 8.4e-33 145.2 296 53.0
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-32 144.4 191 45.5
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 7.1e-32 142.1 244 50.0
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 9.3e-32 141.7 235 61.3
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 9.3e-32 141.7 293 39.6
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.6e-31 141.0 294 44.6
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 6.0e-31 139.0 293 39.6
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 1.0e-30 138.3 305 50.5
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 8.7e-30 135.2 299 44.5
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 3.3e-29 133.3 223 54.3
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 3.3e-29 133.3 307 54.1
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 3.3e-29 133.3 307 54.1
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.3e-29 133.3 257 43.6
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 1.3e-28 131.3 301 44.9
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 2.1e-28 130.6 237 45.6
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.8e-28 130.2 280 45.0
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.8e-28 130.2 196 42.9
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 3.7e-28 129.8 257 56.0
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.7e-28 129.8 201 46.8
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 6.2e-28 129.0 243 50.6
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.2e-28 129.0 193 50.3
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-28 128.6 202 56.9
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 8.2e-28 128.6 290 50.0
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 8.2e-28 128.6 272 46.0
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 1.1e-27 128.3 196 68.9
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 1.1e-27 128.3 232 54.7
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 2.4e-27 127.1 275 49.8
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 3.1e-27 126.7 242 46.7
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.7e-25 120.9 298 44.3
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 2.9e-25 120.2 240 56.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.9e-25 120.2 315 41.0
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.8e-25 119.8 250 44.8
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 3.8e-25 119.8 297 48.5
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 6.5e-25 119.0 279 45.2
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.9e-24 117.5 270 43.7
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 3.2e-24 116.7 257 47.1
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.2e-24 116.7 210 51.9
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.5e-24 115.9 268 48.9
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 1.2e-23 114.8 321 44.9
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.1e-23 114.0 281 41.6
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 3.5e-23 113.2 144 59.0
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 3.0e-22 110.2 292 42.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-22 110.2 143 50.3
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 8.7e-22 108.6 293 47.1
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.1e-21 108.2 208 37.5
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 1.9e-21 107.5 104 73.1
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 2.5e-21 107.1 88 60.2
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 3.3e-21 106.7 184 53.8
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 4.3e-21 106.3 140 48.6
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 4.3e-21 106.3 238 55.9
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 7.4e-21 105.5 195 45.1
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 9.7e-21 105.1 140 47.9
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 1.1e-19 101.7 85 82.4
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 1.1e-19 101.7 218 43.6
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 2.4e-19 100.5 84 56.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 3.1e-19 100.1 84 58.3
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 5.3e-19 99.4 81 60.5
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 6.9e-19 99.0 219 37.4
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 9.0e-19 98.6 157 48.4
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 3.4e-18 96.7 185 51.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.5e-18 96.3 275 39.3
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.0e-17 95.1 185 51.4
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 2.9e-17 93.6 286 51.0
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.1e-16 91.7 131 43.5
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 2.3e-14 84.0 166 61.4
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 3.0e-14 83.6 161 45.3
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 5.7e-13 79.3 161 37.3
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 1.3e-12 78.2 105 65.7
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-12 76.6 197 29.9
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 75.1 241 39.4
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-11 73.9 220 29.5
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 3.1e-11 73.6 161 44.7
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 3.1e-11 73.6 201 30.3
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 5.3e-11 72.8 299 49.5
AUR62024179 Chenopodium quinoa HOM05D002804 ORTHO05D003755 1.2e-10 71.6 65 55.4
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-10 71.6 197 29.4
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.5e-10 71.2 181 40.9
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-10 69.3 195 29.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.0e-09 68.6 168 39.9
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 1.0e-09 68.6 195 29.2
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 3.8e-09 66.6 132 34.8
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.5e-09 65.9 199 28.6
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.5e-09 65.9 195 29.2
COL.COLO4_05836 Corchorus olitorius HOM05D002804 ORTHO05D003755 2.7e-07 60.5 240 30.0
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 2.3e-06 57.4 32 81.2
Sc14g0008930 Simmondsia chinensis HOM05D002804 ORTHO05D003755 3.9e-06 56.6 90 45.6


User provided reference genes

Program Settings