Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 0.0e+00 3167.9 1793 100.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 4.0e-87 328.2 1934 27.8
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.1e-55 222.2 850 32.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.5e-52 212.6 897 30.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 5.5e-52 211.5 678 33.2
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 7.0e-15 88.2 82 46.3
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 7.0e-15 88.2 82 46.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.2e-14 87.4 86 46.5
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.2e-14 87.4 102 42.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.7e-14 86.3 77 50.6
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 3.5e-14 85.9 149 34.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.5e-14 85.9 96 40.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 4.5e-14 85.5 180 33.3
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.5e-14 85.5 77 51.9
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.9e-14 85.1 86 41.9
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 5.9e-14 85.1 81 49.4
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 7.7e-14 84.7 118 37.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.3e-13 84.0 82 46.3
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.7e-13 83.6 93 41.9
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.3e-13 83.2 182 35.7
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.3e-13 83.2 81 46.9
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 3.8e-13 82.4 84 47.6
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 3.8e-13 82.4 99 43.4
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.8e-13 82.4 80 46.2
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 6.6e-13 81.6 158 32.9
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 8.6e-13 81.3 120 37.5
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 8.6e-13 81.3 88 42.0
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.5e-12 80.5 80 48.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-12 80.1 80 45.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 2.5e-12 79.7 82 46.3
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.3e-12 79.3 80 45.0
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.2e-12 79.0 92 42.4
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 5.5e-12 78.6 91 38.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 5.5e-12 78.6 80 43.8
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 5.5e-12 78.6 103 35.9
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.2e-11 77.4 84 42.9
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 2.1e-11 76.6 80 43.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.1e-11 76.6 173 30.6
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-11 76.6 119 35.3
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.8e-11 76.3 86 43.0
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 2.8e-11 76.3 131 32.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 3.6e-11 75.9 91 39.6
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 3.6e-11 75.9 199 29.6
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.6e-11 75.9 81 40.7
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.7e-11 75.5 192 30.7
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 6.1e-11 75.1 146 30.1
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 6.1e-11 75.1 91 36.3
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 8.0e-11 74.7 84 40.5
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.0e-10 74.3 80 41.2
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.0e-10 74.3 86 39.5
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.4e-10 73.9 85 38.8
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.4e-10 73.9 80 42.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-10 73.9 120 35.0
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-10 73.9 98 33.7
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.8e-10 73.6 189 31.2
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.8e-10 73.6 83 33.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.8e-10 73.6 82 40.2
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.0e-10 72.4 86 41.9
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 4.0e-10 72.4 83 41.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.2e-10 72.0 85 37.6
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 5.2e-10 72.0 84 44.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 5.2e-10 72.0 78 42.3
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.2e-10 72.0 85 37.6
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 5.2e-10 72.0 85 37.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.8e-10 71.6 138 28.3
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 6.8e-10 71.6 80 38.8
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.8e-10 71.6 83 39.8
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 8.9e-10 71.2 80 40.0
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.5e-09 70.5 80 42.5
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.5e-09 70.5 227 26.0
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.5e-09 70.5 80 40.0
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 2.6e-09 69.7 194 28.4
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.6e-09 69.7 77 40.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.6e-09 69.7 80 40.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.6e-09 69.7 88 36.4
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 3.4e-09 69.3 213 29.1
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.4e-09 69.3 78 39.7
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.4e-09 68.9 85 36.5
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 4.4e-09 68.9 170 30.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 5.7e-09 68.6 88 37.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 7.5e-09 68.2 80 40.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 7.5e-09 68.2 77 39.0
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 9.8e-09 67.8 77 41.6
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.8e-09 67.8 80 35.0
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 1.3e-08 67.4 66 45.5
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.3e-08 67.4 83 38.6
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.3e-08 67.4 88 35.2
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.7e-08 67.0 85 35.3
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.2e-08 66.6 198 28.8
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 2.8e-08 66.2 88 34.1
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 3.7e-08 65.9 81 37.0
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 3.7e-08 65.9 81 34.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 3.7e-08 65.9 88 38.6
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 4.9e-08 65.5 85 35.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 4.9e-08 65.5 190 28.9
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-07 64.3 82 32.9
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 1.1e-07 64.3 124 32.3
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.1e-07 64.3 82 37.8
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 2.4e-07 63.2 66 42.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.1e-07 62.8 171 28.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 3.1e-07 62.8 107 34.6
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 3.1e-07 62.8 81 33.3
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 4.1e-07 62.4 81 34.6
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.4e-07 62.0 202 24.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 7.0e-07 61.6 80 35.0
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.2e-07 61.2 123 32.5
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 9.2e-07 61.2 77 39.0
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 9.2e-07 61.2 85 35.3
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.2e-06 60.8 91 34.1
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 1.2e-06 60.8 84 39.3
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.6e-06 60.5 143 27.3
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 1.6e-06 60.5 81 39.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.6e-06 60.5 84 36.9
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 1.6e-06 60.5 68 39.7
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 2.7e-06 59.7 131 28.2
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.7e-06 59.7 87 34.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.7e-06 59.7 87 34.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.5e-06 59.3 120 28.3
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 4.5e-06 58.9 84 34.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 4.5e-06 58.9 84 34.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.9e-06 58.5 86 33.7
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 5.9e-06 58.5 80 35.0
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 7.8e-06 58.2 81 32.1


User provided reference genes

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