Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130200 Amaranthus hybridus HOM05D002383 ORTHO05D002515 1.6e-61 239.2 116 100.0
Ah.03g133120 Amaranthus hybridus HOM05D002383 ORTHO05D002515 2.0e-32 142.5 121 66.1
CSS0034273 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 1.9e-14 82.8 99 54.5
Potri.008G187300 Populus trichocarpa HOM05D002383 ORTHO05D002515 7.2e-14 80.9 104 48.1
MD13G1102700 Malus domestica HOM05D002383 ORTHO05D002515 3.6e-13 78.6 114 48.2
CiPaw.06G068500 Carya illinoinensis HOM05D002383 ORTHO05D002515 1.8e-12 76.3 119 47.1
CSS0031549 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 2.3e-12 75.9 104 47.1
Cfa009202 Carpinus fangiana HOM05D002383 ORTHO05D002515 2.3e-12 75.9 100 50.0
TWI18G1125 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 2.3e-12 75.9 99 50.5
Potri.010G045200 Populus trichocarpa HOM05D002383 ORTHO05D002515 3.0e-12 75.5 102 47.1
Manes.12G024000 Manihot esculenta HOM05D002383 ORTHO05D002515 1.2e-11 73.6 118 42.4
Prupe.1G243100 Prunus persica HOM05D002383 ORTHO05D002515 1.2e-11 73.6 120 41.7
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 1.5e-11 73.2 109 45.0
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 1.5e-11 73.2 109 45.0
FAN07G2594 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.0e-11 72.8 117 44.4
FAN17G0502 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.0e-11 72.8 116 43.1
TPR.G38826 Trifolium pratense HOM05D002383 ORTHO05D002515 3.4e-11 72.0 103 42.7
Hma1.2p1_0160F.1_g071240 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 4.4e-11 71.6 99 48.5
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 5.7e-11 71.2 115 43.5
CiPaw.05G183200 Carya illinoinensis HOM05D002383 ORTHO05D002515 7.5e-11 70.9 104 45.2
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 7.5e-11 70.9 115 42.6
RcHm_v2.0_Chr4g0432781 Rosa chinensis HOM05D002383 ORTHO05D002515 7.5e-11 70.9 122 44.3
Rhsim12G0112000 Rhododendron simsii HOM05D002383 ORTHO05D002515 9.8e-11 70.5 105 42.9
Manes.13G025600 Manihot esculenta HOM05D002383 ORTHO05D002515 1.3e-10 70.1 123 43.1
TWI75G1208 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.3e-10 70.1 100 48.0
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 1.7e-10 69.7 99 48.5
MSTRG.570 Avicennia marina HOM05D002383 ORTHO05D002515 1.7e-10 69.7 99 42.4
FvH4_4g25460 Fragaria vesca HOM05D002383 ORTHO05D002515 2.2e-10 69.3 116 42.2
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 2.8e-10 68.9 119 43.7
FAN12G0172 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.8e-10 68.9 116 42.2
COL.COLO4_24249 Corchorus olitorius HOM05D002383 ORTHO05D002515 4.8e-10 68.2 103 44.7
Haze_12239 Corylus avellana HOM05D002383 ORTHO05D002515 4.8e-10 68.2 94 47.9
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 4.8e-10 68.2 115 43.5
FAN22G0427 Fragaria x ananassa HOM05D002383 ORTHO05D002515 4.8e-10 68.2 116 41.4
Phvul.003G064100 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 6.3e-10 67.8 111 43.2
Medtr5g033220 Medicago truncatula HOM05D002383 ORTHO05D002515 8.3e-10 67.4 108 44.4
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 1.1e-09 67.0 105 44.8
Glyma.02G038200 Glycine max HOM05D002383 ORTHO05D002515 1.4e-09 66.6 115 43.5
A09p17240 Brassica napus HOM05D002383 ORTHO05D002515 1.8e-09 66.2 100 43.0
Cpa.g.sc33.8 Carica papaya HOM05D002383 ORTHO05D002515 1.8e-09 66.2 121 41.3
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.8e-09 66.2 119 42.0
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 1.8e-09 66.2 115 42.6
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 2.4e-09 65.9 103 41.7
Cc11_g15590 Coffea canephora HOM05D002383 ORTHO05D002515 3.1e-09 65.5 116 39.7
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 3.1e-09 65.5 96 44.8
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 3.1e-09 65.5 115 42.6
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 4.1e-09 65.1 115 43.5
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 4.1e-09 65.1 115 42.6
Sabra10G0023100 Salix brachista HOM05D001342 ORTHO05D001286 4.1e-09 65.1 110 40.0
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 4.1e-09 65.1 103 44.7
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 5.4e-09 64.7 117 42.7
Glyma.18G143300 Glycine max HOM05D002383 ORTHO05D002515 5.4e-09 64.7 111 40.5
Psat2g092440 Pisum sativum HOM05D002383 ORTHO05D002515 5.4e-09 64.7 105 41.9
CANSAT01G0072 Cannabis sativa HOM05D002383 ORTHO05D002515 7.0e-09 64.3 126 36.5
Duzib268G1316 Durio zibethinus HOM05D002383 ORTHO05D002515 7.0e-09 64.3 104 43.3
Hma1.2p1_0223F.1_g094100 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 7.0e-09 64.3 108 39.8
Psat1g054720 Pisum sativum HOM05D002383 ORTHO05D002515 7.0e-09 64.3 116 44.8
Lj4g0012935 Lotus japonicus HOM05D002383 ORTHO05D002515 9.1e-09 63.9 101 43.6
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 9.1e-09 63.9 104 39.4
Aa31LG2G9800 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.2e-08 63.5 118 39.0
MSTRG.7920 Avicennia marina HOM05D002383 ORTHO05D002515 1.2e-08 63.5 112 46.4
Glyma.01G026600 Glycine max HOM05D002383 ORTHO05D002515 1.2e-08 63.5 115 41.7
Sed0020664 Sechium edule HOM05D002383 ORTHO05D002515 1.2e-08 63.5 115 38.3
VMungo0251G0034 Vigna mungo HOM05D002383 ORTHO05D002515 1.2e-08 63.5 118 39.8
Hma1.2p1_2120F.1_g314410 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 1.6e-08 63.2 119 40.3
Actinidia05994 Actinidia chinensis HOM05D002383 ORTHO05D002515 2.0e-08 62.8 99 40.4
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 3.5e-08 62.0 121 35.5
C09p21300 Brassica napus HOM05D002383 ORTHO05D002515 3.5e-08 62.0 108 38.9
BolC9t55044H Brassica oleracea HOM05D002383 ORTHO05D002515 3.5e-08 62.0 107 37.4
MD16G1102900 Malus domestica HOM05D002383 ORTHO05D002515 3.5e-08 62.0 114 43.0
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 3.5e-08 62.0 115 40.9
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 3.5e-08 62.0 115 42.6
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 3.5e-08 62.0 115 39.1
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 3.5e-08 62.0 102 42.2
Aqoxy2G01151 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 4.5e-08 61.6 98 42.9
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 4.5e-08 61.6 122 35.2
DCAR_007058 Daucus carota HOM05D002383 ORTHO05D002515 4.5e-08 61.6 94 43.6
Lalb_Chr05g0216591 Lupinus albus HOM05D002383 ORTHO05D002515 4.5e-08 61.6 114 43.0
Aa31LG2G5040 Aethionema arabicum HOM05D002383 ORTHO05D002515 5.9e-08 61.2 125 32.8
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 5.9e-08 61.2 98 40.8
BcaC04g22271 Brassica carinata HOM05D002383 ORTHO05D002515 5.9e-08 61.2 107 40.2
BraA09t37356Z Brassica rapa HOM05D002383 ORTHO05D002515 5.9e-08 61.2 100 43.0
Ca_04577_v3 Cicer arietinum L. HOM05D002383 ORTHO05D002515 5.9e-08 61.2 105 41.9
Medtr8g069510 Medicago truncatula HOM05D002383 ORTHO05D002515 5.9e-08 61.2 108 40.7
Phvul.002G150700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 5.9e-08 61.2 116 38.8
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 5.9e-08 61.2 118 36.4
BcaNung05347 Brassica carinata HOM05D002383 ORTHO05D002515 7.7e-08 60.8 100 41.0
Lalb_Chr09g0326151 Lupinus albus HOM05D002383 ORTHO05D002515 7.7e-08 60.8 116 40.5
VMungo1215G0977 Vigna mungo HOM05D002383 ORTHO05D002515 7.7e-08 60.8 122 39.3
Glyma.08G282900 Glycine max HOM05D002383 ORTHO05D002515 1.0e-07 60.5 118 39.0
PGR102G1460 Punica granatum HOM05D002383 ORTHO05D002515 1.0e-07 60.5 99 42.4
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 1.3e-07 60.1 107 41.1
Gohir.D12G149200 Gossypium hirsutum HOM05D002383 ORTHO05D002515 1.3e-07 60.1 93 37.6
Gorai.005G179500 Gossypium raimondii HOM05D002383 ORTHO05D002515 1.3e-07 60.1 105 41.9
Gorai.008G160700 Gossypium raimondii HOM05D002383 ORTHO05D002515 1.3e-07 60.1 93 37.6
SalBow8G3288 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.3e-07 60.1 95 42.1
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 1.7e-07 59.7 118 39.8
Gohir.A12G144600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 1.7e-07 59.7 93 37.6
Gohir.D02G159400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 1.7e-07 59.7 105 41.9
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 2.3e-07 59.3 118 36.4
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 2.3e-07 59.3 118 36.4
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 2.3e-07 59.3 118 36.4
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 2.3e-07 59.3 115 40.9
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.3e-07 59.3 96 42.7
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 2.3e-07 59.3 96 42.7
MBI16_g23839_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 2.3e-07 59.3 105 39.0
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 2.3e-07 59.3 116 41.4
AT1G60783 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 2.9e-07 58.9 94 40.4
AL2G15780 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 3.8e-07 58.5 99 42.4
Haze_14738 Corylus avellana HOM05D002383 ORTHO05D002515 3.8e-07 58.5 89 44.9
Duzib248G0824 Durio zibethinus HOM05D002383 ORTHO05D002515 3.8e-07 58.5 101 39.6
Migut.E00196 Erythranthe guttata HOM05D002383 ORTHO05D002515 3.8e-07 58.5 95 35.8
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 3.8e-07 58.5 119 38.7
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 5.0e-07 58.2 118 36.4
CARHR051790 Cardamine hirsuta HOM05D002383 ORTHO05D002515 5.0e-07 58.2 99 38.4
Solyc02g067810.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 5.0e-07 58.2 102 39.2
Sopen02g016920 Solanum pennellii HOM05D002383 ORTHO05D002515 5.0e-07 58.2 102 39.2
Aa31LG2G5060 Aethionema arabicum HOM05D002383 ORTHO05D002515 6.6e-07 57.8 122 32.0
Eucgr.B03299 Eucalyptus grandis HOM05D002383 ORTHO05D002515 6.6e-07 57.8 105 41.9
Lsat_1_v5_gn_4_183900 Lactuca sativa HOM05D002383 ORTHO05D002515 6.6e-07 57.8 114 38.6
Lj2g0006785 Lotus japonicus HOM05D002383 ORTHO05D002515 6.6e-07 57.8 115 41.7
Oeu018138.1 Olea europaea HOM05D002383 ORTHO05D002515 6.6e-07 57.8 103 39.8
CSS0002762 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 8.6e-07 57.4 93 43.0
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 8.6e-07 57.4 115 40.9
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 1.1e-06 57.0 116 37.1
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 1.1e-06 57.0 118 35.6
CAN.G473.10 Capsicum annuum HOM05D002383 ORTHO05D002515 1.1e-06 57.0 91 42.9
QL03p058475 Quercus lobata HOM05D002383 ORTHO05D002515 1.1e-06 57.0 116 38.8
CARHR010870 Cardamine hirsuta HOM05D002383 ORTHO05D002515 1.5e-06 56.6 99 39.4
Cfa007370 Carpinus fangiana HOM05D002383 ORTHO05D002515 1.5e-06 56.6 89 43.8
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 1.5e-06 56.6 115 40.0
Oeu054622.1 Olea europaea HOM05D002383 ORTHO05D002515 1.5e-06 56.6 93 41.9
Phvul.004G010700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 1.5e-06 56.6 110 40.9
Rhsim10G0017000 Rhododendron simsii HOM05D002383 ORTHO05D002515 1.5e-06 56.6 117 36.8
PGSC0003DMG400006915 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.5e-06 56.6 113 38.1
Sed0014920 Sechium edule HOM05D002383 ORTHO05D002515 1.9e-06 56.2 115 40.9
PGSC0003DMG400012600 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.9e-06 56.2 91 42.9
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 2.5e-06 55.8 101 42.6
Sopen02g031160 Solanum pennellii HOM05D002383 ORTHO05D002515 2.5e-06 55.8 64 51.6
TPR.G34660 Trifolium pratense HOM05D002383 ORTHO05D002515 2.5e-06 55.8 104 39.4
Gohir.A03G136100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.3e-06 55.5 105 40.0
Lalb_Chr06g0175741 Lupinus albus HOM05D002383 ORTHO05D002515 3.3e-06 55.5 122 36.1
Oeu001712.1 Olea europaea HOM05D002383 ORTHO05D002515 3.3e-06 55.5 97 44.3
Sabra08G0141800 Salix brachista HOM05D002383 ORTHO05D002515 3.3e-06 55.5 82 42.7
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 3.3e-06 55.5 116 36.2
unitig_747.g21862 Utricularia gibba HOM05D002383 ORTHO05D002515 3.3e-06 55.5 65 44.6
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 4.2e-06 55.1 123 32.5
CARHR149050 Cardamine hirsuta HOM05D002383 ORTHO05D002515 4.2e-06 55.1 103 35.0
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 4.2e-06 55.1 118 34.7
Glyma.19G005400 Glycine max HOM05D002383 ORTHO05D002515 4.2e-06 55.1 109 39.4
Gohir.D10G086500 Gossypium hirsutum HOM05D002383 ORTHO05D002515 4.2e-06 55.1 112 37.5
Peaxi162Scf00080g00104 Petunia axillaris HOM05D002383 ORTHO05D002515 4.2e-06 55.1 111 37.8
SalBow2G2844 Salvia bowleyana HOM05D002383 ORTHO05D002515 4.2e-06 55.1 88 37.5
THA.LOC104805371 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 4.2e-06 55.1 124 33.9
TAR374G1253 Trochodendron aralioides HOM05D002383 ORTHO05D002515 4.2e-06 55.1 102 38.2
SGA_v2.0_scaffold135G34905 Striga asiatica HOM05D002383 ORTHO05D002515 5.5e-06 54.7 116 37.9
BraA09t35983Z Brassica rapa HOM05D002383 ORTHO05D002515 7.2e-06 54.3 99 34.3
CANSAT64G1350 Cannabis sativa HOM05D002383 ORTHO05D002515 7.2e-06 54.3 131 38.9
Sp2g03960 Schrenkiella parvula HOM05D002383 ORTHO05D002515 7.2e-06 54.3 122 37.7
Solyc02g086450.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 9.5e-06 53.9 63 50.8


User provided reference genes

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