Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.5e-41 172.6 94 100.0
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 9.3e-20 100.1 71 78.9
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 3.1e-15 85.1 95 51.6
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.1e-15 85.1 89 52.8
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.3e-15 84.3 95 52.6
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 1.2e-14 83.2 95 50.5
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.9e-13 78.6 95 48.4
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.9e-12 75.9 96 46.9
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 7.2e-12 73.9 95 48.4
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.1e-11 72.4 95 45.3
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.7e-11 72.0 86 48.8
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 88 50.0
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 88 50.0
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.9e-11 70.5 91 47.3
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 7.9e-11 70.5 95 44.2
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 7.9e-11 70.5 89 44.9
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.3e-10 68.9 93 44.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 3.0e-10 68.6 93 46.2
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 5.1e-10 67.8 93 44.1
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 5.1e-10 67.8 85 48.2
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 6.7e-10 67.4 97 43.3
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 6.7e-10 67.4 93 39.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.1e-09 66.6 95 46.3
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.3e-09 65.1 93 38.7
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 4.3e-09 64.7 97 43.3
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.3e-09 64.7 95 43.2
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 4.3e-09 64.7 91 41.8
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.4e-09 63.9 95 44.2
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 9.7e-09 63.5 90 44.4
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.3e-08 63.2 96 43.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.7e-08 62.8 87 41.4
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.7e-08 62.8 94 42.6
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.8e-08 62.0 89 43.8
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 2.8e-08 62.0 85 44.7
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.7e-08 61.6 94 41.5
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.7e-08 61.6 94 41.5
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 8.2e-08 60.5 93 39.8
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.1e-07 60.1 90 42.2
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 94 40.4
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 1.4e-07 59.7 102 43.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.8e-07 59.3 89 42.7
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.8e-07 59.3 90 41.1
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.8e-07 59.3 87 40.2
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.4e-07 58.9 93 37.6
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.4e-07 58.9 89 42.7
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.4e-07 58.9 90 37.8
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 5.3e-07 57.8 91 42.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 5.3e-07 57.8 104 37.5
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 6.9e-07 57.4 75 42.7
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 6.9e-07 57.4 75 42.7
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 6.9e-07 57.4 75 42.7
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.9e-07 57.4 90 38.9
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.9e-07 57.4 95 38.9
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 6.9e-07 57.4 95 37.9
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 9.1e-07 57.0 86 44.2
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.1e-07 57.0 95 38.9
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 95 40.0
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.5e-06 56.2 95 37.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.0e-06 55.8 84 39.3
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 2.0e-06 55.8 87 39.1
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 2.0e-06 55.8 85 40.0
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 2.0e-06 55.8 93 36.6
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 2.6e-06 55.5 79 41.8
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 3.4e-06 55.1 73 42.5
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.4e-06 55.1 94 37.2
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 4.5e-06 54.7 88 40.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 5.9e-06 54.3 90 40.0
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.9e-06 54.3 94 37.2
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 5.9e-06 54.3 75 41.3
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 5.9e-06 54.3 116 36.2


User provided reference genes

Program Settings