Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.3e-137 493.0 253 100.0
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.9e-96 356.3 253 75.9
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.8e-95 352.4 263 71.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.7e-80 301.6 250 66.8
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.9e-76 289.3 250 64.8
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.1e-70 270.8 255 59.2
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.1e-70 269.2 248 62.1
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 3.1e-70 269.2 248 62.5
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 7.7e-69 264.6 249 61.0
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.0e-68 264.2 248 59.7
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.7e-68 263.5 248 60.9
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.9e-68 262.7 249 59.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.8e-68 262.3 249 59.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 6.5e-68 261.5 248 58.9
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.1e-67 260.8 251 58.6
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.9e-67 260.0 249 58.2
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.9e-67 260.0 249 59.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.2e-67 259.2 248 56.5
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.2e-67 258.8 249 58.6
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 7.2e-67 258.1 251 58.2
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 9.4e-67 257.7 249 58.2
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.2e-66 257.3 249 58.2
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.7e-66 256.1 248 58.1
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.7e-66 256.1 248 56.5
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.7e-66 256.1 248 57.3
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.6e-66 255.8 250 59.2
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 4.7e-66 255.4 251 58.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 4.7e-66 255.4 249 57.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 8.0e-66 254.6 248 56.0
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.0e-65 254.2 250 59.6
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 2.3e-65 253.1 248 59.3
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 3.0e-65 252.7 250 58.4
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 3.0e-65 252.7 248 57.7
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.0e-65 252.7 251 58.6
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.0e-65 252.3 246 58.9
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 5.2e-65 251.9 249 57.8
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.2e-65 251.9 248 58.1
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 6.7e-65 251.5 247 58.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 6.7e-65 251.5 248 58.9
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.7e-65 251.5 250 58.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 6.7e-65 251.5 247 59.5
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-64 250.8 252 55.2
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.6e-64 249.6 249 58.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.6e-64 249.6 249 58.6
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.3e-64 249.2 248 57.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.4e-64 248.8 248 59.3
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.7e-63 246.9 248 57.7
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.7e-63 246.9 246 55.7
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.7e-63 245.7 223 59.6
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.8e-63 245.4 248 56.0
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.8e-63 245.4 248 56.0
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.3e-63 245.0 248 56.0
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 8.2e-63 244.6 249 57.4
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 8.2e-63 244.6 261 55.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 8.2e-63 244.6 249 57.4
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 8.2e-63 244.6 249 57.4
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.8e-62 243.4 248 58.5
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.4e-62 243.0 247 58.3
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.1e-62 242.7 248 57.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 5.3e-62 241.9 183 67.8
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.3e-62 241.9 248 58.9
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.0e-62 241.5 168 73.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 9.1e-62 241.1 248 58.9
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-61 240.7 249 55.4
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.6e-61 240.4 248 56.5
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.7e-61 239.6 248 56.0
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.5e-61 238.8 249 55.0
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.0e-60 237.7 247 53.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.0e-60 237.7 197 60.9
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-60 236.9 200 64.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.2e-60 236.5 199 61.3
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 2.2e-60 236.5 252 54.4
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.2e-60 236.5 195 62.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.2e-60 236.5 248 54.4
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-59 234.2 248 54.4
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-59 234.2 248 54.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.9e-59 233.4 247 55.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.5e-59 233.0 251 52.6
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 7.2e-59 231.5 247 54.3
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 7.2e-59 231.5 283 49.5
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.2e-59 231.5 177 66.7
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 9.4e-59 231.1 198 61.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 9.4e-59 231.1 250 54.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.1e-58 229.9 212 59.0
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 6.1e-58 228.4 198 58.6
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.4e-57 227.3 169 65.7
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-57 227.3 248 54.4
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.2e-57 225.3 251 55.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.2e-56 224.2 246 54.1
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-56 223.8 239 58.2
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.5e-56 223.8 160 70.6
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.5e-56 223.8 253 52.2
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.0e-56 223.4 178 63.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-56 223.4 160 68.8
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 3.4e-56 222.6 247 53.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.4e-56 222.6 248 54.4
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-56 221.9 246 54.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 5.7e-56 221.9 199 58.8
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 7.5e-56 221.5 251 54.2
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-55 220.3 198 57.1
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.7e-55 219.2 243 53.9
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.8e-55 218.8 246 54.5
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 8.3e-55 218.0 243 53.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 8.3e-55 218.0 247 52.6
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 8.3e-55 218.0 152 72.4
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.4e-54 217.2 243 53.9
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.4e-54 217.2 156 71.8
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.8e-54 216.9 156 71.2
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 3.1e-54 216.1 249 51.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 4.1e-54 215.7 249 53.0
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 7.0e-54 214.9 164 67.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 9.1e-54 214.5 251 53.4
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-53 213.4 249 53.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.0e-53 213.4 198 57.6
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 7.7e-53 211.5 250 52.4
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 7.7e-53 211.5 250 52.4
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 7.7e-53 211.5 197 58.4
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.8e-52 209.1 159 68.6
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.1e-51 207.6 253 51.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-51 207.2 218 53.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.9e-51 206.8 248 51.2
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 3.3e-51 206.1 220 53.2
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.2e-50 204.1 156 71.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-50 204.1 243 51.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.8e-49 200.3 237 51.9
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-48 197.6 179 58.7
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 9.8e-48 194.5 134 71.6
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.1e-46 189.5 248 46.8
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.1e-46 189.5 248 46.8
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-45 186.8 154 62.3
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 6.6e-44 181.8 151 59.6
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-43 181.0 161 59.6
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.5e-43 179.9 128 68.8
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.2e-41 172.2 148 61.5
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 2.6e-40 169.9 173 55.5
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.3e-39 167.5 177 54.2
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.9e-39 166.4 253 45.1
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.7e-39 166.0 196 51.0
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 8.6e-36 154.8 99 77.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 5.2e-33 145.6 108 69.4
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.3e-31 141.0 149 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.4e-30 136.7 186 45.2
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.2e-30 136.3 170 48.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.7e-29 133.3 131 54.2
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 6.0e-29 132.1 98 64.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.0e-28 129.0 130 53.8
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.6e-28 128.6 129 53.5
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-27 127.9 121 58.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 2.2e-23 113.6 86 66.3
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 8.1e-18 95.1 68 72.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.8e-17 94.0 95 58.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.8e-17 94.0 95 58.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.4e-16 89.4 64 68.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 9.2e-14 81.6 103 43.7
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.0e-12 78.2 63 58.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 5.1e-12 75.9 105 39.0
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.5e-11 74.3 105 40.0


User provided reference genes

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