Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 0.0e+00 1349.7 703 100.0
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 3.2e-157 559.7 739 50.1
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.0e-111 407.5 576 49.3
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.7e-110 404.4 524 52.7
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 7.6e-90 335.9 689 39.6
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 4.5e-66 256.9 358 46.9
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.1e-63 248.1 296 51.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.1e-61 242.3 305 49.2
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 6.2e-60 236.5 498 38.6
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 8.1e-60 236.1 297 50.8
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.3e-57 228.8 330 44.5
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.9e-57 227.6 321 48.0
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 9.3e-56 222.6 401 41.4
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.6e-55 220.3 314 45.5
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.6e-55 220.3 314 45.5
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.0e-54 217.6 310 47.4
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 5.1e-54 216.9 503 37.4
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.5e-53 214.5 333 45.9
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 5.7e-53 213.4 380 41.3
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 7.4e-53 213.0 343 41.7
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.6e-52 211.8 362 43.6
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.1e-52 211.5 378 37.8
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 4.1e-51 207.2 382 40.8
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 4.1e-51 207.2 448 37.3
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 6.9e-51 206.5 285 48.4
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.2e-50 205.7 349 43.3
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 1.2e-50 205.7 493 39.4
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.5e-50 205.3 390 40.8
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 2.0e-50 204.9 415 38.8
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.5e-50 203.8 385 40.8
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 4.5e-50 203.8 327 41.6
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.9e-50 203.4 314 45.2
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 7.6e-50 203.0 445 39.6
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.0e-49 202.6 388 42.8
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.3e-49 202.2 331 42.0
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.3e-49 202.2 448 37.1
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.7e-49 201.8 389 43.2
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.7e-49 201.8 294 46.6
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.7e-49 201.8 335 43.3
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.9e-49 201.1 298 43.0
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 5.0e-49 200.3 334 41.3
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 8.5e-49 199.5 435 39.1
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 8.5e-49 199.5 364 41.8
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.4e-48 198.7 346 41.6
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.9e-48 198.4 300 44.7
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 2.5e-48 198.0 435 37.7
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.5e-48 198.0 355 42.3
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 4.2e-48 197.2 309 41.7
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.5e-48 196.8 409 38.6
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 5.5e-48 196.8 376 39.1
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 7.2e-48 196.4 294 43.2
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 7.2e-48 196.4 377 41.1
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 7.2e-48 196.4 421 36.6
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 9.3e-48 196.1 494 34.2
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.2e-47 195.7 316 43.7
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.6e-47 195.3 401 40.6
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.6e-47 195.3 293 44.7
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 2.1e-47 194.9 401 40.9
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.1e-47 194.9 386 42.7
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.1e-47 194.9 304 42.1
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.7e-47 194.5 317 41.3
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.6e-47 194.1 427 38.4
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.6e-47 194.1 395 39.2
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 6.1e-47 193.4 402 38.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 7.9e-47 193.0 379 38.5
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 7.9e-47 193.0 286 45.5
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 2.3e-46 191.4 273 45.8
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 3.0e-46 191.0 310 42.9
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 3.9e-46 190.7 332 40.7
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 3.9e-46 190.7 382 42.4
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.1e-46 190.3 390 35.6
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 5.1e-46 190.3 382 40.1
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 5.1e-46 190.3 377 39.8
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 8.7e-46 189.5 354 38.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.5e-45 188.7 275 46.2
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.9e-45 188.3 408 37.5
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.3e-45 187.6 282 43.3
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.7e-45 186.8 304 43.1
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.6e-44 185.3 384 39.1
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.6e-44 185.3 395 37.0
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.2e-44 184.9 324 40.4
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 6.3e-44 183.3 314 43.3
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 8.2e-44 183.0 280 43.6
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.1e-43 182.6 708 31.4
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.4e-43 182.2 290 42.1
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-42 179.1 354 37.6
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-42 179.1 354 37.6
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.5e-42 178.7 286 40.9
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.5e-42 178.7 276 43.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.0e-42 178.3 445 34.8
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 7.7e-42 176.4 300 42.3
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 2.9e-41 174.5 294 41.2
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 2.9e-41 174.5 294 41.2
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 8.5e-41 172.9 262 44.3
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 4.2e-40 170.6 429 35.4
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 9.4e-40 169.5 277 41.9
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.1e-39 168.3 293 41.6
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 7.9e-39 166.4 309 39.2
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.0e-38 166.0 289 39.1
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.8e-38 165.2 290 43.1
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.0e-38 164.5 291 42.3
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.6e-37 161.4 308 39.6
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.2e-36 158.3 293 38.9
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.1e-35 156.0 315 37.8
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.4e-35 155.6 497 31.0
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.4e-35 155.6 497 31.0
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 5.3e-35 153.7 530 30.8
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.5e-34 150.6 256 42.2
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 4.5e-34 150.6 274 40.1
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.4e-32 145.6 359 33.7
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 6.1e-31 140.2 315 39.4
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 7.9e-31 139.8 249 43.4
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.4e-30 139.0 273 38.8
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 4.4e-29 134.0 176 47.2
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 7.7e-26 123.2 275 35.3
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.7e-25 122.1 196 43.9
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.8e-22 112.1 302 32.8
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.5e-21 109.0 254 35.4
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.7e-20 105.5 131 43.5
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 1.4e-19 102.4 224 38.4
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.1e-19 99.8 284 33.1
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.6e-15 89.0 255 30.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.4e-14 85.9 270 31.1
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.6e-13 81.6 244 32.4
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.4e-11 75.1 371 29.4
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 5.4e-11 73.9 312 27.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.6e-07 62.4 183 32.8
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 2.8e-07 61.6 68 52.9
Cre14.g624600 Chlamydomonas reinhardtii HOM05D005322 ORTHO05D006746 2.3e-06 58.5 60 41.7
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 3.0e-06 58.2 46 54.3
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 3.0e-06 58.2 171 34.5
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 8.8e-06 56.6 44 63.6


User provided reference genes

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