Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 3.3e-68 261.5 128 100.0
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 2.2e-27 125.9 119 60.5
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.6e-22 109.8 132 49.2
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.8e-21 106.3 123 48.8
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 8.8e-13 77.4 100 41.0
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.2e-12 77.0 91 49.5
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 2.6e-12 75.9 90 44.4
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.4e-12 75.1 103 45.6
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.5e-12 74.3 81 49.4
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-11 73.6 94 45.7
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.3e-11 73.6 115 43.5
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.8e-11 72.4 87 44.8
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.7e-11 72.0 87 48.3
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-11 72.0 89 41.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.7e-11 72.0 89 41.6
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 6.3e-11 71.2 78 46.2
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 8.3e-11 70.9 107 41.1
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 8.3e-11 70.9 91 48.4
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.1e-10 70.5 99 44.4
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-10 70.5 83 44.6
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.4e-10 69.3 106 42.5
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 5.4e-10 68.2 96 38.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 7.0e-10 67.8 95 41.1
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.0e-10 67.8 88 44.3
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.1e-10 67.4 94 42.6
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.1e-10 67.4 91 44.0
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.2e-09 67.0 91 46.2
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.0e-09 66.2 99 42.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 2.7e-09 65.9 96 43.8
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.5e-09 65.5 83 42.2
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 4.5e-09 65.1 85 43.5
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 5.9e-09 64.7 86 43.0
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.7e-09 64.3 91 42.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.3e-08 63.5 89 42.7
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.3e-08 63.5 89 42.7
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-08 62.8 85 47.1
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 6.5e-08 61.2 88 42.0
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 8.5e-08 60.8 109 40.4
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 8.5e-08 60.8 89 42.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.5e-08 60.8 58 53.4
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 8.5e-08 60.8 86 39.5
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.1e-07 60.5 99 40.4
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.1e-07 60.5 87 39.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.1e-07 60.5 101 40.6
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.1e-07 60.5 91 41.8
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.5e-07 60.1 92 43.5
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-07 59.7 121 33.9
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.5e-07 59.3 90 38.9
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.2e-07 58.9 61 50.8
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 3.2e-07 58.9 94 38.3
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 3.2e-07 58.9 86 40.7
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.2e-07 58.5 60 50.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-07 58.5 58 51.7
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.2e-07 58.5 58 51.7
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 4.2e-07 58.5 91 39.6
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.2e-07 57.8 97 40.2
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.2e-07 57.8 70 48.6
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-06 57.0 77 39.0
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.6e-06 56.6 95 41.1
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-06 56.2 70 48.6
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 2.7e-06 55.8 92 40.2
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.7e-06 55.8 62 48.4
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 3.6e-06 55.5 95 40.0
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.6e-06 55.5 97 39.2
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.6e-06 55.5 92 41.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.7e-06 55.1 84 41.7
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.7e-06 55.1 92 39.1
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 4.7e-06 55.1 92 39.1
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 4.7e-06 55.1 96 39.6
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 8.0e-06 54.3 123 33.3
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.0e-06 54.3 123 33.3
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.0e-06 54.3 102 34.3


User provided reference genes

Program Settings