Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.5e-234 815.8 418 100.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 9.4e-197 690.3 425 83.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.0e-187 658.3 397 82.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.5e-159 565.5 320 85.6
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.1e-156 556.2 396 70.7
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.4e-152 543.5 438 67.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.0e-150 537.3 433 64.7
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.0e-150 535.8 432 66.7
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 9.5e-149 530.8 398 68.3
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.6e-148 528.9 398 68.6
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.1e-147 527.3 433 65.4
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.4e-147 526.9 396 69.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.3e-147 526.2 394 69.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 4.0e-147 525.4 428 67.1
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 8.9e-147 524.2 433 64.7
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 8.9e-147 524.2 397 68.0
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.2e-146 523.9 433 64.0
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.5e-146 523.5 399 65.9
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.1e-144 517.3 395 68.9
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.2e-144 515.8 432 64.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.2e-144 515.8 431 66.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.1e-143 513.1 399 65.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.1e-143 513.1 434 64.3
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.7e-143 512.7 437 65.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.7e-143 512.7 437 65.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.7e-143 512.7 396 67.2
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.6e-143 511.9 441 62.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.6e-143 511.9 437 65.0
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.6e-143 511.9 431 61.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 7.8e-143 511.1 427 63.7
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 7.8e-143 511.1 396 64.6
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.0e-142 510.8 432 61.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.3e-142 509.6 437 63.6
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.9e-142 508.8 437 64.3
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.9e-142 508.8 436 64.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 5.1e-142 508.4 432 63.2
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 8.6e-142 507.7 434 62.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.5e-141 506.1 439 63.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 7.3e-141 504.6 435 63.4
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.2e-140 503.8 428 66.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.8e-140 502.7 396 64.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.1e-139 500.7 394 66.2
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.3e-139 499.6 393 65.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.3e-139 499.6 392 66.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 4.0e-139 498.8 440 62.5
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 6.8e-139 498.0 433 63.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-138 496.5 436 60.6
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.6e-138 494.6 426 63.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-137 493.8 441 61.2
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.3e-137 493.8 398 63.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.2e-137 493.0 441 61.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.2e-137 493.0 424 63.2
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.9e-137 492.7 396 64.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.9e-137 491.9 399 64.9
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.4e-137 491.5 441 61.5
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.9e-136 490.0 430 62.3
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.1e-136 488.8 436 64.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.4e-136 488.4 431 61.9
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 7.1e-136 488.0 398 65.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 9.2e-136 487.6 431 62.2
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.1e-135 486.5 438 61.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.3e-134 483.8 413 63.0
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.3e-134 483.8 416 60.6
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.3e-134 483.8 439 61.0
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.7e-134 483.4 437 60.0
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.3e-134 483.0 406 62.6
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.1e-133 480.7 399 63.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.9e-133 479.9 437 59.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.5e-133 479.6 417 61.6
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.1e-132 476.5 393 64.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.7e-132 475.3 432 62.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 6.2e-132 474.9 445 62.2
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.1e-131 474.2 392 63.0
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.4e-131 473.8 425 60.2
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.0e-131 472.2 397 64.7
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 4.0e-131 472.2 440 60.5
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 8.9e-131 471.1 397 65.0
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.5e-130 470.3 393 64.1
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.4e-129 464.5 401 61.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.1e-128 464.2 423 60.8
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.6e-127 460.3 398 62.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.7e-127 459.5 430 60.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.5e-127 459.1 394 62.9
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.5e-127 459.1 397 61.2
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.0e-127 458.4 431 59.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.0e-126 457.6 366 64.8
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.0e-126 457.6 403 61.8
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.3e-126 457.2 432 60.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.1e-125 454.1 435 59.1
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.3e-125 452.2 397 62.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.3e-124 450.7 394 61.4
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.6e-124 449.1 394 60.9
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 8.1e-124 448.0 394 60.9
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 8.1e-124 448.0 394 60.9
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-123 447.6 436 56.9
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.0e-123 445.7 394 60.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.0e-123 445.7 441 56.7
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.5e-122 442.2 438 57.5
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.5e-122 442.2 439 57.9
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.8e-122 441.8 439 57.9
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.9e-121 438.7 431 56.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 4.9e-121 438.7 388 59.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 4.2e-120 435.6 430 56.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 5.1e-118 428.7 437 57.2
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.5e-117 427.2 393 59.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.4e-115 419.9 401 57.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-114 417.5 396 58.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.5e-114 417.2 396 58.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 7.6e-114 414.8 395 59.7
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 9.9e-114 414.5 433 54.5
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.9e-112 410.2 432 54.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 4.3e-109 399.1 452 50.9
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.8e-108 395.6 396 52.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.4e-107 394.0 393 53.2
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.8e-107 393.7 435 50.6
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-106 391.0 396 52.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.0e-106 390.2 393 53.9
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-106 389.8 387 54.5
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.2e-105 386.7 385 53.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.5e-104 382.1 397 51.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.2e-103 380.9 309 63.8
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.4e-83 313.5 336 52.1
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 8.5e-81 305.1 432 44.2
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.1e-79 298.9 240 65.4
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.0e-70 271.6 298 49.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.8e-68 263.5 395 39.2
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.1e-64 251.5 224 57.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 5.2e-62 242.7 238 55.9
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.5e-61 241.1 228 52.6
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.6e-55 221.1 197 67.0
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.0e-54 218.4 165 66.7
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 6.8e-54 215.7 205 58.0
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.2e-51 205.3 194 63.9
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 9.2e-51 205.3 159 67.9
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 6.1e-47 192.6 360 34.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.6e-45 187.2 175 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.5e-42 176.8 313 34.2
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.3e-17 95.1 120 50.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.5e-16 90.9 79 57.0
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.2e-12 77.8 90 46.7
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.0e-09 68.9 94 46.8
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 4.3e-08 63.5 36 69.4
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.1e-07 61.2 138 34.8
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 3.6e-07 60.5 164 29.3


User provided reference genes

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