Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 5.2e-78 294.7 189 100.0
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.4e-67 258.1 189 86.2
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.7e-65 253.1 189 86.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.4e-54 216.9 186 81.7
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 3.4e-53 212.2 195 68.2
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 4.4e-53 211.8 187 78.6
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.2e-52 209.5 188 62.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 3.2e-51 205.7 190 64.7
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 7.1e-51 204.5 192 63.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.1e-50 203.0 189 67.7
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.7e-50 202.6 188 75.0
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 7.8e-50 201.1 192 62.0
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 7.8e-50 201.1 194 68.6
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.3e-49 199.5 192 62.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.3e-49 199.5 190 70.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 6.6e-49 198.0 195 64.1
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.1e-48 197.2 192 62.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 2.5e-48 196.1 203 62.1
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.5e-48 196.1 188 64.9
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 4.3e-48 195.3 189 65.6
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 5.6e-48 194.9 185 73.5
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 5.6e-48 194.9 188 71.3
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 5.6e-48 194.9 190 66.8
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.2e-47 193.7 186 74.2
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.2e-47 193.7 194 62.9
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.1e-47 193.0 192 57.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.8e-47 192.6 187 63.6
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.8e-47 192.6 189 72.0
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.8e-47 192.6 190 71.6
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.7e-47 191.8 191 65.4
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 8.1e-47 191.0 190 63.7
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.4e-46 190.3 189 68.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.8e-46 189.9 192 67.7
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.8e-46 189.9 193 65.3
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.4e-46 189.5 189 61.4
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 3.1e-46 189.1 190 63.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 4.0e-46 188.7 193 66.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 5.2e-46 188.3 189 63.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 5.2e-46 188.3 192 63.0
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.2e-46 188.3 190 71.1
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 8.9e-46 187.6 116 83.6
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 8.9e-46 187.6 191 59.2
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.2e-45 187.2 195 64.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.2e-45 187.2 194 60.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.2e-45 187.2 195 62.6
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.0e-45 186.4 191 69.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 2.6e-45 186.0 193 67.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.4e-45 185.3 192 63.0
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.8e-45 184.9 197 61.9
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 7.6e-45 184.5 194 61.3
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 7.6e-45 184.5 190 66.8
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 9.9e-45 184.1 192 60.4
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.9e-45 184.1 189 58.7
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-44 183.7 189 58.7
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.7e-44 183.3 189 58.7
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.9e-44 182.6 182 61.5
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.8e-44 182.2 190 60.5
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 6.4e-44 181.4 188 58.5
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 8.4e-44 181.0 201 57.7
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.4e-44 181.0 189 60.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.1e-43 180.6 188 69.1
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.4e-43 180.3 191 64.9
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.9e-43 179.9 191 67.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-43 179.9 189 58.2
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.4e-43 179.5 195 59.5
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 4.2e-43 178.7 190 64.2
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 5.4e-43 178.3 188 66.0
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.7e-42 176.0 191 66.0
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 2.7e-42 176.0 192 67.2
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.5e-42 175.6 190 69.5
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 4.6e-42 175.3 190 65.3
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 6.0e-42 174.9 189 65.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 7.8e-42 174.5 193 65.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 7.8e-42 174.5 189 69.8
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 7.8e-42 174.5 204 64.7
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 7.8e-42 174.5 194 59.8
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 7.8e-42 174.5 194 64.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.0e-41 174.1 188 60.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.7e-41 173.3 198 56.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-41 173.3 187 70.1
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.7e-41 173.3 187 70.1
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.7e-41 173.3 190 65.3
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 3.9e-41 172.2 192 57.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 6.6e-41 171.4 191 64.4
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 6.6e-41 171.4 199 59.3
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.1e-40 170.6 190 69.5
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-40 169.9 189 58.7
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.5e-40 169.5 195 56.4
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 9.6e-40 167.5 186 61.8
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 9.6e-40 167.5 190 61.6
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.8e-39 166.0 190 60.0
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.8e-39 166.0 190 60.0
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.8e-39 166.0 190 60.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.8e-38 163.3 191 68.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-38 163.3 194 56.2
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 5.3e-38 161.8 190 58.9
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 5.3e-38 161.8 190 58.9
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.3e-38 161.8 148 80.4
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.9e-38 161.4 191 67.5
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.2e-37 160.6 201 52.7
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 5.8e-37 158.3 191 67.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.3e-36 157.1 191 67.5
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.4e-35 153.7 182 51.1
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 3.2e-35 152.5 187 50.3
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 4.6e-34 148.7 184 48.4
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.5e-32 143.7 187 53.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 4.3e-32 142.1 188 58.5
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 7.3e-32 141.4 188 45.7
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.8e-30 136.7 100 70.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 6.9e-30 134.8 164 49.4
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.0e-29 133.3 135 59.3
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 3.4e-29 132.5 140 60.0
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.3e-28 130.6 202 59.4
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-27 127.5 135 57.8
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 7.1e-27 124.8 164 46.3
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 4.6e-26 122.1 115 56.5
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-26 121.7 164 45.7
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.0e-25 120.9 109 59.6
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.3e-25 120.6 183 42.1
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-24 115.9 155 53.5
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 4.8e-23 112.1 185 53.5
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-22 110.9 117 53.0
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 9.0e-22 107.8 117 52.1
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.0e-21 106.7 65 78.5
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 4.5e-21 105.5 117 51.3
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 4.5e-21 105.5 117 53.0
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.7e-20 103.6 97 60.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 4.6e-18 95.5 123 47.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 3.9e-17 92.4 105 70.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 8.7e-17 91.3 85 57.6
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.8e-15 86.3 119 53.8
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 1.4e-11 73.9 84 50.0
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.9e-11 73.6 132 58.3
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 2.8e-07 59.7 65 53.8
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 1.1e-06 57.8 173 39.9


User provided reference genes

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