Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128820 Amaranthus hybridus HOM05D006339 ORTHO05D007892 2.3e-78 295.4 145 100.0
Hund04181 Selenicereus undatus HOM05D006339 ORTHO05D007892 6.0e-58 227.6 120 89.2
Glyma.18G281300 Glycine max HOM05D006339 ORTHO05D007892 9.5e-56 220.3 122 86.1
Phvul.008G019700 Phaseolus vulgaris HOM05D006339 ORTHO05D007892 4.7e-55 218.0 116 88.8
THA.LOC104802366 Tarenaya hassleriana HOM05D006339 ORTHO05D007892 6.2e-55 217.6 113 89.4
VMungo1383G1391 Vigna mungo HOM05D006339 ORTHO05D007892 6.2e-55 217.6 116 88.8
Ca_08200_v3 Cicer arietinum L. HOM05D006339 ORTHO05D007892 8.1e-55 217.2 118 87.3
COL.COLO4_13376 Corchorus olitorius HOM05D006339 ORTHO05D007892 8.1e-55 217.2 123 83.7
MELO3C025063.2 Cucumis melo HOM05D006339 ORTHO05D007892 8.1e-55 217.2 120 85.8
Potri.001G435300 Populus trichocarpa HOM05D006339 ORTHO05D007892 8.1e-55 217.2 125 84.8
Lj1g0006115 Lotus japonicus HOM05D006339 ORTHO05D007892 1.1e-54 216.9 122 85.2
Potri.001G429200 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.1e-54 216.9 125 84.8
PSO478G5314 Papaver somniferum HOM05D006339 ORTHO05D007892 1.4e-54 216.5 120 85.8
Potri.001G432400 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.4e-54 216.5 122 86.1
QL02p069471 Quercus lobata HOM05D006339 ORTHO05D007892 1.8e-54 216.1 118 86.4
Manes.11G076700 Manihot esculenta HOM05D006339 ORTHO05D007892 2.4e-54 215.7 121 86.8
PSO017G1553 Papaver somniferum HOM05D006339 ORTHO05D007892 2.4e-54 215.7 118 86.4
vmacro01209 Vaccinium macrocarpon HOM05D006339 ORTHO05D007892 2.4e-54 215.7 124 80.6
GSVIVG01032984001 Vitis vinifera HOM05D006339 ORTHO05D007892 2.4e-54 215.7 121 86.0
ClCG01G008260 Citrullus lanatus HOM05D006339 ORTHO05D007892 3.1e-54 215.3 118 86.4
arahy.Tifrunner.gnm1.ann1.RW2HW9 Arachis hypogaea HOM05D006339 ORTHO05D007892 4.0e-54 214.9 122 86.1
arahy.Tifrunner.gnm1.ann1.WXC194 Arachis hypogaea HOM05D006339 ORTHO05D007892 4.0e-54 214.9 118 87.3
Lalb_Chr01g0015281 Lupinus albus HOM05D006339 ORTHO05D007892 4.0e-54 214.9 124 83.1
Rhsim12G0052300 Rhododendron simsii HOM05D006339 ORTHO05D007892 4.0e-54 214.9 124 82.3
Thecc.04G048000 Theobroma cacao HOM05D006339 ORTHO05D007892 4.0e-54 214.9 123 82.9
CsaV3_5G020130 Cucumis sativus L. HOM05D006339 ORTHO05D007892 5.2e-54 214.5 120 84.2
Migut.F00012 Erythranthe guttata HOM05D006339 ORTHO05D007892 5.2e-54 214.5 112 89.3
Thhalv10017294m.g Eutrema salsugineum HOM05D006339 ORTHO05D007892 5.2e-54 214.5 113 88.5
Eucgr.G01929 Eucalyptus grandis HOM05D006339 ORTHO05D007892 6.8e-54 214.2 123 83.7
Potri.011G139300 Populus trichocarpa HOM05D006339 ORTHO05D007892 6.8e-54 214.2 125 84.0
AL4G35130 Arabidopsis lyrata HOM05D006339 ORTHO05D007892 8.9e-54 213.8 120 84.2
MSTRG.16761 Avicennia marina HOM05D006339 ORTHO05D007892 8.9e-54 213.8 118 86.4
Gohir.D07G240000 Gossypium hirsutum HOM05D006339 ORTHO05D007892 8.9e-54 213.8 116 85.3
Nitab4.5_0000898g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 8.9e-54 213.8 124 81.5
TWI81G1088 Tripterygium wilfordii HOM05D006339 ORTHO05D007892 8.9e-54 213.8 125 83.2
Cpa.g.sc70.64 Carica papaya HOM05D006339 ORTHO05D007892 1.2e-53 213.4 121 84.3
Potri.001G425800 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.2e-53 213.4 123 84.6
Sabra16G0289600 Salix brachista HOM05D006339 ORTHO05D007892 1.2e-53 213.4 122 84.4
CSS0020777 Camellia sinensis var. sinensis HOM05D006339 ORTHO05D007892 1.5e-53 213.0 120 81.7
Ciclev10016247m.g Citrus clementina HOM05D006339 ORTHO05D007892 1.5e-53 213.0 126 83.3
Gohir.A07G232800 Gossypium hirsutum HOM05D006339 ORTHO05D007892 1.5e-53 213.0 116 86.2
Sed0000694 Sechium edule HOM05D006339 ORTHO05D007892 1.5e-53 213.0 121 85.1
AT2G38130 Arabidopsis thaliana HOM05D006339 ORTHO05D007892 2.0e-53 212.6 120 82.5
Carub.0004s2010 Capsella rubella HOM05D006339 ORTHO05D007892 2.0e-53 212.6 113 86.7
Duzib264G0796 Durio zibethinus HOM05D006339 ORTHO05D007892 2.0e-53 212.6 116 85.3
Sabra11G0125200 Salix brachista HOM05D006339 ORTHO05D007892 2.0e-53 212.6 123 83.7
SalBow7G3927 Salvia bowleyana HOM05D006339 ORTHO05D007892 2.0e-53 212.6 114 86.8
TAR622G0978 Trochodendron aralioides HOM05D006339 ORTHO05D007892 2.0e-53 212.6 124 83.1
Actinidia09846 Actinidia chinensis HOM05D006339 ORTHO05D007892 2.6e-53 212.2 123 82.1
Dinv33278 Davidia involucrata HOM05D006339 ORTHO05D007892 2.6e-53 212.2 124 81.5
Sopen09g034880 Solanum pennellii HOM05D006339 ORTHO05D007892 2.6e-53 212.2 119 84.0
unitig_0.g1640 Utricularia gibba HOM05D006339 ORTHO05D007892 3.4e-53 211.8 113 86.7
Sc07g0003800 Simmondsia chinensis HOM05D006339 ORTHO05D007892 4.4e-53 211.5 121 86.0
TPR.G15412 Trifolium pratense HOM05D006339 ORTHO05D007892 4.4e-53 211.5 122 82.0
CARHR132720 Cardamine hirsuta HOM05D006339 ORTHO05D007892 5.8e-53 211.1 113 87.6
Psat3g093240 Pisum sativum HOM05D006339 ORTHO05D007892 5.8e-53 211.1 122 82.0
Aa31LG3G16140 Aethionema arabicum HOM05D006339 ORTHO05D007892 7.6e-53 210.7 113 85.0
ATR0582G044 Amborella trichopoda HOM05D006339 ORTHO05D007892 7.6e-53 210.7 115 84.3
PGSC0003DMG401031287 Solanum tuberosum HOM05D006339 ORTHO05D007892 7.6e-53 210.7 119 83.2
A05p07900 Brassica napus HOM05D006339 ORTHO05D007892 9.9e-53 210.3 113 85.0
C04p09550 Brassica napus HOM05D006339 ORTHO05D007892 9.9e-53 210.3 113 85.0
BolC4t22561H Brassica oleracea HOM05D006339 ORTHO05D007892 9.9e-53 210.3 113 85.0
BraA05t19756Z Brassica rapa HOM05D006339 ORTHO05D007892 9.9e-53 210.3 113 85.0
Medtr7g084140 Medicago truncatula HOM05D006339 ORTHO05D007892 1.3e-52 209.9 122 82.0
Cc07_g01310 Coffea canephora HOM05D006339 ORTHO05D007892 1.7e-52 209.5 122 83.6
Gorai.001G276200 Gossypium raimondii HOM05D006339 ORTHO05D007892 1.7e-52 209.5 117 85.5
Peaxi162Scf00047g00520 Petunia axillaris HOM05D006339 ORTHO05D007892 1.7e-52 209.5 119 82.4
Sp4g20450 Schrenkiella parvula HOM05D006339 ORTHO05D007892 1.7e-52 209.5 122 82.8
CiPaw.03G001600 Carya illinoinensis HOM05D006339 ORTHO05D007892 2.2e-52 209.1 120 82.5
DCAR_014468 Daucus carota HOM05D006339 ORTHO05D007892 2.2e-52 209.1 108 89.8
Solyc09g091980.3 Solanum lycopersicum HOM05D006339 ORTHO05D007892 2.2e-52 209.1 119 83.2
CAN.G1635.5 Capsicum annuum HOM05D006339 ORTHO05D007892 3.8e-52 208.4 119 82.4
Atru.chr6.2696 Acer truncatum HOM05D006339 ORTHO05D007892 4.9e-52 208.0 120 82.5
PGR042G1393 Punica granatum HOM05D006339 ORTHO05D007892 4.9e-52 208.0 116 84.5
Aqoxy5G03118 Aquilegia oxysepala HOM05D006339 ORTHO05D007892 6.4e-52 207.6 116 83.6
CDE06G1050 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 6.4e-52 207.6 118 81.4
Prupe.3G313900 Prunus persica HOM05D006339 ORTHO05D007892 6.4e-52 207.6 112 86.6
Sed0011617 Sechium edule HOM05D006339 ORTHO05D007892 6.4e-52 207.6 119 84.0
SGA_v2.0_scaffold44G16955 Striga asiatica HOM05D006339 ORTHO05D007892 8.4e-52 207.2 118 81.4
CDE02G1951 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 1.4e-51 206.5 118 82.2
HPP92_023026 Vanilla planifolia HOM05D006339 ORTHO05D007892 1.4e-51 206.5 109 89.0
ECA246G5025 Erigeron canadensis HOM05D006339 ORTHO05D007892 3.2e-51 205.3 113 85.8
Lsat_1_v5_gn_0_22620 Lactuca sativa HOM05D006339 ORTHO05D007892 3.2e-51 205.3 112 85.7
MD09G1002300 Malus domestica HOM05D006339 ORTHO05D007892 7.1e-51 204.1 119 80.7
Hma1.2p1_1389F.1_g280000 Hydrangea macrophylla HOM05D006339 ORTHO05D007892 3.5e-50 201.8 108 84.3
HanXRQChr17g0550981 Helianthus annuus HOM05D006339 ORTHO05D007892 4.6e-50 201.4 112 83.9
RcHm_v2.0_Chr2g0176551 Rosa chinensis HOM05D006339 ORTHO05D007892 2.3e-49 199.1 120 80.8
FAN05G1930 Fragaria x ananassa HOM05D006339 ORTHO05D007892 3.0e-49 198.7 112 81.2
Haze_14951 Corylus avellana HOM05D006339 ORTHO05D007892 3.9e-49 198.4 141 70.9
FvH4_6g54330 Fragaria vesca HOM05D006339 ORTHO05D007892 3.9e-49 198.4 112 80.4
Nitab4.5_0001416g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 3.9e-49 198.4 117 79.5
Zm00001eb113280 Zea mays HOM05D006339 ORTHO05D007892 2.1e-47 192.6 120 76.7
Os11g0525800 Oryza sativa ssp. japonica HOM05D006339 ORTHO05D007892 6.2e-47 191.0 110 82.7
SEGI_41446 Sequoiadendron giganteum HOM05D006339 ORTHO05D007892 1.8e-46 189.5 112 78.6
MBI10_g42609_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 1.5e-45 186.4 118 78.8
Zm00001eb198110 Zea mays HOM05D006339 ORTHO05D007892 2.0e-45 186.0 109 80.7
Oeu048678.3 Olea europaea HOM05D006339 ORTHO05D007892 1.3e-44 183.3 162 59.3
MBI10_g46354_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 4.9e-44 181.4 96 87.5
MBI10_g47709_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 4.9e-44 181.4 96 87.5
AUR62017432 Chenopodium quinoa HOM05D006339 ORTHO05D007892 1.4e-43 179.9 92 90.2
Lj7C617T19 Lonicera japonica HOM05D006339 ORTHO05D007892 3.5e-42 175.3 98 84.7
Pp3c21_5060 Physcomitrium patens HOM05D006339 ORTHO05D007892 1.0e-41 173.7 110 71.8
Pp3c18_17900 Physcomitrium patens HOM05D006339 ORTHO05D007892 8.7e-41 170.6 126 65.1
Mapoly0127s0038 Marchantia polymorpha HOM05D006339 ORTHO05D007892 4.3e-40 168.3 107 72.9
SMO266G0054 Selaginella moellendorffii HOM05D006339 ORTHO05D007892 4.3e-40 168.3 107 72.9
EL10Ac6g13407 Beta vulgaris HOM05D006339 ORTHO05D007892 1.4e-38 163.3 120 67.5
CBR_g48357 Chara braunii HOM05D006339 ORTHO05D007892 1.1e-35 153.7 112 61.6
MD05G1042000 Malus domestica HOM05D006339 ORTHO05D007892 1.1e-35 153.7 88 81.8
Duzib187G1607 Durio zibethinus HOM05D006339 ORTHO05D007892 1.0e-33 147.1 116 64.7
PRCOL_00001995 Prasinoderma coloniale HOM05D006339 ORTHO05D007892 4.8e-31 138.3 108 58.3
Cre14.g623800 Chlamydomonas reinhardtii HOM05D006339 ORTHO05D007892 5.8e-29 131.3 118 56.8
Nn3g16274 Nelumbo nucifera HOM05D006339 ORTHO05D007892 1.3e-25 120.2 62 90.3
FAN02G3444 Fragaria x ananassa HOM05D006339 ORTHO05D007892 1.8e-25 119.8 81 71.6
Potri.001G433800 Populus trichocarpa HOM05D006339 ORTHO05D007892 2.3e-25 119.4 84 71.4
AUR62037822 Chenopodium quinoa HOM05D006339 ORTHO05D007892 5.1e-25 118.2 62 87.1
MCO12G247 Micromonas commoda HOM05D006339 ORTHO05D007892 5.6e-24 114.8 109 51.4
Haze_27130 Corylus avellana HOM05D006339 ORTHO05D007892 1.0e-20 104.0 108 47.2
Cfa007162 Carpinus fangiana HOM05D006339 ORTHO05D007892 9.7e-16 87.4 48 83.3
BolC4t22511H Brassica oleracea HOM05D006339 ORTHO05D007892 3.1e-14 82.4 82 52.4
AagrBONN_evm.TU.Sc2ySwM_369.240 Anthoceros agrestis HOM05D006339 ORTHO05D007892 5.5e-11 71.6 49 73.5
SGA_v2.0_scaffold4G02481 Striga asiatica HOM05D002214 ORTHO05D005113 2.4e-06 56.2 93 36.6
TAR633G1565 Trochodendron aralioides HOM05D002214 ORTHO05D005113 4.1e-06 55.5 78 38.5
Medtr3g034200 Medicago truncatula HOM05D002214 ORTHO05D005113 5.3e-06 55.1 88 37.5
Psat5g212520 Pisum sativum HOM05D002214 ORTHO05D005113 5.3e-06 55.1 88 37.5
TPR.G14549 Trifolium pratense HOM05D002214 ORTHO05D005113 5.3e-06 55.1 88 37.5
Glyma.08G257200 Glycine max HOM05D006339 ORTHO05D007892 6.9e-06 54.7 35 80.0
TWI09G0624 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 6.9e-06 54.7 88 37.5
Ca_27724_v3 Cicer arietinum L. HOM05D002214 ORTHO05D005113 9.1e-06 54.3 88 36.4
Lj3g0001707 Lotus japonicus HOM05D002214 ORTHO05D005113 9.1e-06 54.3 88 36.4


User provided reference genes

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