Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.9e-272 940.3 476 100.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 5.5e-169 598.2 474 69.4
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.1e-128 463.4 458 57.0
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 8.4e-125 451.4 386 66.3
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-121 439.9 453 52.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-121 439.9 453 52.8
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.4e-116 423.3 466 51.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 6.6e-114 415.2 462 50.2
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-113 414.5 465 49.0
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.5e-113 414.1 462 51.3
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.3e-112 411.0 501 48.1
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.1e-111 406.4 482 49.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.5e-110 402.5 478 49.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.8e-110 402.1 468 50.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.9e-109 399.8 445 50.1
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 4.9e-109 399.1 454 49.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.9e-109 399.1 492 47.0
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.4e-109 398.7 466 49.6
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.4e-109 398.3 449 49.0
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.2e-108 396.0 473 48.0
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 9.3e-108 394.8 467 46.9
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 7.9e-107 391.7 469 48.8
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.7e-106 388.7 444 49.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.5e-105 387.5 473 48.8
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.8e-104 383.3 469 45.0
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.8e-104 382.5 481 47.6
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 6.2e-104 382.1 466 48.1
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.4e-103 380.9 447 48.1
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.1e-103 379.8 479 47.6
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.0e-103 379.4 472 47.5
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.5e-102 377.5 453 47.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.6e-102 376.7 472 46.4
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 4.5e-102 375.9 449 45.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.7e-101 374.0 457 45.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.9e-101 373.2 488 47.7
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.8e-101 372.9 428 48.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 8.4e-101 371.7 466 48.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.1e-100 371.3 469 48.8
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 9.3e-100 368.2 480 45.4
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 7.9e-99 365.2 458 48.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.3e-97 359.8 474 44.3
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 7.4e-97 358.6 440 46.8
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.7e-96 356.3 478 46.7
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.9e-92 344.0 456 42.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 2.5e-92 343.6 428 46.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.7e-91 340.1 430 45.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.7e-91 340.1 468 46.4
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.9e-91 338.6 442 45.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.1e-90 335.9 444 42.1
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.3e-89 332.8 438 46.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 8.2e-88 328.6 506 41.1
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 9.0e-87 325.1 433 44.6
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.2e-85 320.5 475 42.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.2e-80 303.9 461 41.2
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 9.1e-79 298.5 384 45.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 9.4e-76 288.5 443 39.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.0e-74 285.0 462 38.7
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.3e-74 283.9 423 43.5
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.7e-69 267.7 451 37.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.2e-68 263.1 440 37.3
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.6e-67 260.0 449 37.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.9e-66 256.5 439 37.1
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.2e-66 256.1 443 36.6
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 6.3e-64 249.2 441 36.1
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 4.1e-63 246.5 448 34.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 9.1e-63 245.4 448 34.8
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.0e-62 244.2 448 33.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 7.7e-62 242.3 448 33.7
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 7.7e-62 242.3 448 33.7
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.2e-61 240.7 450 32.7
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.5e-60 237.3 431 36.4
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.2e-60 236.9 439 33.0
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.2e-60 236.9 398 37.4
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 4.2e-60 236.5 433 35.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.2e-60 236.5 438 33.1
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 8.0e-59 232.3 467 34.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.4e-57 226.5 432 34.7
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.7e-57 225.3 433 35.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.7e-56 224.6 449 33.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 8.2e-56 222.2 378 36.8
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 9.1e-55 218.8 343 43.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.0e-53 215.3 443 33.9
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.3e-53 214.9 401 36.7
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.0e-53 213.0 446 33.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.1e-52 211.8 446 33.0
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 4.2e-52 209.9 443 34.8
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.6e-51 208.0 455 33.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-50 204.5 344 42.2
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.3e-50 204.1 485 33.4
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 5.2e-50 203.0 319 41.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 8.8e-50 202.2 442 33.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.8e-50 202.2 362 36.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-49 201.4 366 36.6
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.4e-49 200.3 433 31.9
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 5.7e-49 199.5 430 32.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.3e-48 196.1 347 35.2
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.4e-47 194.1 364 35.2
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.9e-46 189.5 343 35.9
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 5.9e-46 189.5 356 33.4
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.3e-45 187.6 170 54.1
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.3e-45 187.6 422 32.2
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-44 185.3 371 34.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.2e-44 183.3 385 33.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 7.2e-44 182.6 366 32.2
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 7.2e-44 182.6 373 31.9
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 7.2e-44 182.6 378 32.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.6e-43 180.3 390 33.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-42 177.9 320 34.7
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.3e-42 177.6 375 33.1
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 8.9e-42 175.6 445 29.7
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 5.7e-41 172.9 420 31.9
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 9.8e-41 172.2 126 63.5
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.1e-39 168.7 243 43.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 3.3e-36 157.1 443 30.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.3e-36 157.1 359 31.2
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.5e-36 155.6 357 31.4
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.0e-34 152.1 144 54.2
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.8e-34 151.4 136 51.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.3e-34 151.0 384 32.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.0e-34 150.6 301 34.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.0e-34 150.6 301 34.2
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 3.0e-34 150.6 144 53.5
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 8.3e-32 142.5 149 49.7
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-31 141.7 285 31.6
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.2e-31 140.6 381 30.7
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 9.2e-31 139.0 162 46.9
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.0e-30 137.9 158 44.9
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 7.8e-30 136.0 178 39.3
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-28 131.3 280 35.4
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.5e-28 131.0 107 58.9
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 5.6e-28 129.8 142 50.0
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.0e-27 125.9 411 27.3
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 8.3e-24 115.9 289 28.7
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-23 115.5 178 36.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.4e-23 113.2 411 26.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.7e-21 108.2 152 38.8
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.0e-17 94.7 115 45.2
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.6e-17 94.4 124 38.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.5e-17 92.8 103 45.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 9.2e-15 85.9 162 34.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.1e-14 84.7 75 58.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.9e-13 80.5 133 40.6
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 4.7e-11 73.6 103 37.9
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-10 72.0 67 53.7


User provided reference genes

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