Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 4.5e-258 894.0 444 100.0
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.9e-212 741.9 446 82.5
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 9.4e-187 657.1 433 76.9
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 2.6e-165 585.9 426 67.1
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 7.7e-165 584.3 427 67.0
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.0e-164 583.9 427 67.0
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.1e-163 580.5 427 66.3
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 5.5e-163 578.2 426 67.1
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 2.1e-162 576.2 431 65.2
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.0e-161 573.9 427 65.8
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.8e-161 573.2 427 65.3
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 3.0e-161 572.4 440 64.8
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 5.2e-161 571.6 428 65.9
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 5.2e-161 571.6 444 66.0
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 6.7e-161 571.2 440 64.5
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 2.6e-160 569.3 432 65.3
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 5.7e-160 568.2 427 66.0
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.5e-160 567.8 432 65.5
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 9.7e-160 567.4 435 64.4
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 3.7e-159 565.5 427 63.5
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.8e-159 565.1 427 63.7
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.8e-159 565.1 428 65.4
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.4e-158 563.5 427 64.2
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 2.4e-158 562.8 427 63.9
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 3.1e-158 562.4 428 64.3
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 9.1e-158 560.8 424 64.2
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 2.0e-157 559.7 426 63.4
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.7e-157 559.3 428 63.8
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 3.5e-157 558.9 432 64.1
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 5.9e-157 558.1 454 62.3
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.0e-156 557.4 428 63.6
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.0e-156 557.4 426 63.6
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.0e-156 557.4 511 55.6
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.3e-156 557.0 458 61.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.9e-155 553.1 439 62.9
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.2e-154 550.4 441 62.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 1.6e-154 550.1 430 61.6
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 6.1e-154 548.1 426 62.2
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 4.0e-153 545.4 448 60.5
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.0e-153 545.4 427 63.0
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.2e-152 543.9 431 61.9
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 2.0e-152 543.1 424 63.0
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 5.7e-152 541.6 428 63.6
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 2.4e-150 536.2 393 67.4
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.1e-150 535.8 424 61.6
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 9.1e-150 534.3 427 61.4
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 2.7e-149 532.7 428 61.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 7.7e-149 531.2 488 56.6
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 2.3e-148 529.6 503 55.3
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.9e-148 529.3 432 60.9
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 3.3e-147 525.8 379 67.8
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.2e-147 525.4 432 62.0
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 7.2e-147 524.6 440 60.2
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 1.2e-146 523.9 424 61.3
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 2.1e-146 523.1 440 60.0
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.6e-146 522.3 432 61.8
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 8.0e-146 521.2 428 59.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.2e-145 518.5 423 60.8
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 5.2e-145 518.5 376 66.8
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 6.8e-145 518.1 431 58.2
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 9.8e-144 514.2 428 61.7
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.2e-143 513.1 407 61.4
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.8e-143 512.7 436 58.7
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.8e-137 491.5 427 58.1
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.6e-136 489.6 426 58.2
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.3e-135 487.3 425 56.0
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 6.4e-135 485.0 427 58.1
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 8.6e-132 474.6 371 62.5
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 3.6e-130 469.2 364 62.1
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.4e-129 467.2 350 65.4
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.7e-127 460.3 462 51.9
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.2e-126 456.1 343 66.8
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.2e-126 456.1 364 62.9
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 9.6e-115 417.9 462 51.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 3.2e-110 402.9 427 48.7
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 3.0e-108 396.4 419 47.7
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 1.1e-105 387.9 446 46.4
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.1e-105 387.9 286 66.8
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.4e-104 382.9 294 64.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.8e-104 382.1 304 62.2
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 4.6e-101 372.5 293 61.8
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 7.3e-99 365.2 292 61.6
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.8e-96 355.5 422 45.0
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 1.6e-93 347.4 430 43.5
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 4.3e-91 339.3 428 43.2
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.5e-86 322.4 415 43.4
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 6.2e-82 308.9 294 53.1
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 1.4e-78 297.7 282 55.3
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.9e-77 292.0 412 40.0
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 3.3e-75 286.6 465 37.2
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.6e-74 284.3 333 46.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.8e-74 282.7 239 59.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 4.5e-72 276.2 417 38.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 4.5e-72 276.2 426 37.6
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.9e-72 275.8 425 37.2
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 7.7e-72 275.4 438 36.5
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 5.0e-71 272.7 244 54.9
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 8.5e-71 271.9 567 32.3
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 7.2e-70 268.9 461 36.0
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 3.7e-66 256.5 200 65.0
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.1e-65 253.1 425 36.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.7e-63 247.7 188 64.9
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-56 224.9 371 37.2
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.5e-54 218.0 445 32.1
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 6.1e-53 212.6 386 35.8
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 6.1e-53 212.6 382 35.3
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 3.3e-51 206.8 158 64.6
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 2.2e-50 204.1 142 71.1
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-45 188.0 216 50.5
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.5e-43 181.4 422 31.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 4.8e-42 176.4 407 31.2
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 8.5e-39 165.6 266 38.0
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 9.4e-38 162.2 334 32.0
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 8.0e-37 159.1 133 62.4
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 4.4e-35 153.3 160 54.4
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.0e-33 146.0 345 31.3
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 9.1e-33 145.6 124 62.1
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.1e-33 145.6 122 56.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.2e-32 145.2 143 53.8
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.6e-32 144.8 224 41.1
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.9e-31 140.6 113 62.8
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.0e-31 139.8 193 40.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-30 136.0 136 50.7
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.0e-29 132.5 124 52.4
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.6e-24 118.2 84 67.9
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.0e-23 113.2 134 44.0
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.3e-22 110.2 205 34.1
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.6e-22 109.8 230 31.3
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.2e-21 108.6 76 68.4
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.6e-21 107.1 161 39.8
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.6e-21 107.1 113 47.8
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.3e-18 98.6 52 82.7
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.0e-15 86.7 101 38.6
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.1e-13 79.3 74 48.6
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.4e-12 78.6 79 48.1
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.9e-06 58.2 41 68.3
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 9.5e-06 55.8 171 28.1


User provided reference genes

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