Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.0e-164 582.4 306 100.0
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 7.1e-85 318.2 308 61.0
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 9.6e-66 254.6 293 55.3
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.4e-61 240.7 188 64.9
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.2e-37 159.8 328 37.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.0e-34 150.6 326 39.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.2e-33 147.1 324 38.0
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.7e-33 146.4 310 36.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 8.2e-33 145.2 334 37.7
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.1e-32 144.8 332 39.5
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.1e-32 143.3 324 36.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.0e-32 142.1 325 34.2
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.9e-31 139.0 324 34.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.9e-31 139.0 324 36.7
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 7.7e-31 138.7 324 39.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.0e-30 138.3 318 35.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.2e-30 137.1 327 33.9
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.2e-30 137.1 320 34.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 6.5e-30 135.6 336 36.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 8.5e-30 135.2 304 35.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.5e-29 133.7 318 37.1
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.5e-29 133.7 318 37.1
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.2e-29 133.3 321 35.5
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.2e-29 132.9 318 35.8
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 4.2e-29 132.9 325 33.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 7.2e-29 132.1 326 35.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.1e-28 130.6 327 32.4
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.1e-28 130.6 315 34.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.1e-28 130.6 321 36.1
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.7e-28 129.4 316 39.2
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.7e-28 129.4 316 39.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 8.0e-28 128.6 315 36.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 8.0e-28 128.6 326 32.8
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.0e-27 128.3 313 36.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.4e-27 127.9 317 32.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.4e-27 127.9 319 37.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.3e-27 127.1 312 31.7
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.2e-26 124.8 321 36.1
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.6e-26 123.6 334 35.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.6e-26 123.6 332 35.2
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.4e-26 123.2 332 33.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.4e-26 122.9 334 32.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 5.7e-26 122.5 334 35.0
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.8e-26 121.7 325 31.4
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 9.8e-26 121.7 318 34.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.7e-25 120.9 321 32.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.2e-25 120.6 323 33.7
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.8e-25 120.2 334 32.9
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.7e-25 119.8 334 35.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.7e-25 119.8 311 32.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 4.8e-25 119.4 322 34.2
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.3e-25 119.0 275 34.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.3e-25 118.6 320 36.2
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-24 118.2 322 37.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-24 118.2 321 39.6
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.1e-24 118.2 322 31.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.1e-24 118.2 308 36.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.1e-24 116.7 318 35.8
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.1e-24 116.7 305 34.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 4.1e-24 116.3 326 33.1
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.1e-24 116.3 322 34.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.1e-24 116.3 325 31.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.1e-24 116.3 325 31.1
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.0e-24 115.5 323 35.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 9.1e-24 115.2 338 34.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 9.1e-24 115.2 323 36.5
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.6e-23 114.4 324 31.8
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.6e-23 114.4 320 32.8
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.0e-23 114.0 312 34.3
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.0e-23 114.0 319 31.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-23 113.6 313 32.6
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.5e-23 112.8 319 33.5
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.5e-23 112.8 319 33.5
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 5.9e-23 112.5 317 34.4
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 7.7e-23 112.1 322 33.5
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 7.7e-23 112.1 322 33.5
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.3e-22 111.3 325 32.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.7e-22 110.9 312 35.3
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.8e-22 109.8 315 35.2
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 5.0e-22 109.4 315 33.3
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 6.5e-22 109.0 318 34.6
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 6.5e-22 109.0 313 33.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 6.5e-22 109.0 317 33.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-21 108.2 315 33.3
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-21 107.1 318 32.1
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-21 107.1 323 34.4
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.5e-21 107.1 320 28.1
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 3.2e-21 106.7 315 33.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.2e-21 106.3 318 30.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 7.2e-21 105.5 316 34.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 7.2e-21 105.5 319 35.7
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 9.4e-21 105.1 316 38.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.2e-20 104.8 320 27.5
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.6e-20 104.4 319 33.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.7e-20 103.6 342 33.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.7e-20 103.6 275 31.6
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 4.7e-20 102.8 189 39.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 6.1e-20 102.4 314 34.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 8.0e-20 102.1 324 33.6
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.0e-19 101.7 312 30.8
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-19 100.9 281 31.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.3e-19 100.5 296 32.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.0e-19 100.1 322 31.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 5.2e-19 99.4 308 31.2
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.5e-18 97.8 310 31.6
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 3.4e-18 96.7 325 30.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.7e-17 94.4 292 26.7
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.7e-17 94.4 291 28.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.2e-17 94.0 292 27.1
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.7e-17 93.2 300 30.0
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 8.3e-17 92.0 239 31.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.1e-16 90.1 301 30.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 4.1e-16 89.7 317 29.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.8e-14 83.2 308 32.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 6.6e-14 82.4 313 31.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 7.2e-13 79.0 306 32.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 9.5e-13 78.6 151 35.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.8e-12 77.0 149 30.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 3.6e-12 76.6 315 32.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 3.6e-12 76.6 315 32.1
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.6e-12 76.6 282 26.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-12 76.3 314 31.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.7e-12 76.3 198 32.3
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 4.7e-12 76.3 315 27.0
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.3e-11 73.9 276 28.6
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.3e-11 73.9 270 33.7
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.0e-11 73.2 293 30.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 8.9e-11 72.0 299 25.1
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-10 70.9 299 27.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.6e-10 70.5 322 29.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 7.5e-10 68.9 140 30.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 9.8e-10 68.6 282 29.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.3e-09 68.2 318 24.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.7e-09 67.8 298 26.8
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.7e-09 67.8 150 30.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 6.3e-09 65.9 139 31.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.1e-08 65.1 310 28.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.4e-08 63.9 302 29.1
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 7.0e-08 62.4 98 40.8
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.2e-07 61.6 249 28.9
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-07 60.8 256 29.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.9e-06 57.0 277 28.9


User provided reference genes

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