Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 9.6e-172 606.7 293 100.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.5e-140 503.1 278 85.6
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 3.4e-137 491.9 282 83.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 5.0e-136 488.0 268 87.3
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.5e-135 485.7 270 85.6
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.4e-130 469.2 283 77.7
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 3.1e-130 468.8 279 80.3
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 5.3e-130 468.0 282 79.4
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.5e-129 466.5 282 78.0
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.5e-129 464.9 277 80.5
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 4.5e-129 464.9 281 74.4
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.5e-129 464.9 282 77.3
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.0e-128 463.8 283 78.4
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.3e-128 463.4 284 76.8
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 2.9e-128 462.2 284 77.8
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 3.8e-128 461.8 279 78.9
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 3.8e-128 461.8 283 77.4
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 8.5e-128 460.7 250 87.2
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.1e-127 460.3 283 77.7
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.1e-127 460.3 283 78.8
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.1e-127 460.3 283 78.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.2e-127 458.8 283 77.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.2e-127 458.4 283 77.4
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 5.5e-127 458.0 281 74.7
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 5.5e-127 458.0 282 76.6
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 7.2e-127 457.6 281 73.3
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 9.4e-127 457.2 282 76.6
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 9.4e-127 457.2 283 78.1
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 3.6e-126 455.3 280 75.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 3.6e-126 455.3 278 76.3
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.6e-126 455.3 280 76.4
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.6e-126 455.3 283 74.9
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 3.6e-126 455.3 283 76.7
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.0e-125 453.8 283 75.6
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.4e-125 453.4 283 77.0
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.4e-125 453.4 279 78.1
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.4e-125 453.4 282 76.2
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.8e-125 453.0 282 74.1
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.8e-125 453.0 280 76.4
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 2.3e-125 452.6 280 76.4
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 2.3e-125 452.6 280 76.1
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 3.9e-125 451.8 283 74.9
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 3.9e-125 451.8 282 75.9
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 5.1e-125 451.4 280 74.3
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 5.1e-125 451.4 280 75.4
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.1e-125 451.4 283 76.7
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 8.8e-125 450.7 288 72.2
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.0e-124 449.5 280 73.6
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 3.3e-124 448.7 280 73.9
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 3.3e-124 448.7 280 73.9
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.4e-124 448.4 280 73.2
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.4e-124 448.4 280 73.2
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.4e-124 448.4 269 79.6
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 5.7e-124 448.0 279 77.1
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 7.4e-124 447.6 279 76.7
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 9.7e-124 447.2 277 77.6
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.7e-124 447.2 282 75.2
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 9.7e-124 447.2 284 75.4
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 9.7e-124 447.2 282 75.9
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.3e-123 446.8 283 75.6
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-123 445.3 282 75.5
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 3.7e-123 445.3 283 75.6
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 3.7e-123 445.3 282 74.1
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.7e-123 445.3 277 75.5
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 4.8e-123 444.9 283 74.6
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.8e-123 444.9 283 75.6
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.8e-123 444.9 280 73.9
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 6.3e-123 444.5 283 76.3
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 6.3e-123 444.5 286 76.2
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-122 443.7 281 75.1
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.4e-122 442.6 280 75.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 4.1e-122 441.8 280 72.5
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 5.3e-122 441.4 282 73.4
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 283 73.9
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.9e-121 438.0 283 74.9
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 7.7e-121 437.6 288 74.0
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.0e-120 437.2 280 73.9
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.7e-120 436.4 282 72.3
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.9e-119 433.0 281 71.5
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.5e-119 432.6 269 77.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 3.2e-119 432.2 270 76.7
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.2e-119 431.8 307 67.4
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 4.2e-119 431.8 283 73.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.5e-119 431.4 283 74.2
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 5.5e-119 431.4 283 74.2
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.7e-118 429.1 283 73.9
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.6e-116 422.5 283 72.8
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 4.4e-116 421.8 283 71.0
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.8e-115 419.1 276 73.6
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 7.0e-114 414.5 248 78.6
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.2e-112 409.5 269 72.9
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.0e-112 408.3 293 69.6
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 8.5e-112 407.5 314 64.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.9e-111 406.4 276 70.3
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.9e-111 406.4 278 67.3
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 8.0e-110 401.0 276 69.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.6e-108 396.0 263 73.4
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 2.8e-107 392.5 263 71.1
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 9.1e-106 387.5 251 70.1
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 9.1e-106 387.5 251 69.7
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.1e-103 380.6 260 66.9
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 3.6e-102 375.6 236 77.1
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 9.8e-100 367.5 245 71.8
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.7e-96 356.7 248 66.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.3e-95 352.4 424 47.9
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.1e-90 337.4 285 55.1
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.4e-90 336.3 290 55.9
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 7.0e-90 334.7 190 81.1
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.7e-88 330.1 410 47.3
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.6e-86 323.6 281 56.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 4.7e-86 322.0 267 61.4
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 9.5e-79 297.7 266 55.3
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.3e-77 293.1 167 80.2
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.5e-76 290.4 167 79.6
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.2e-75 286.6 176 75.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 9.2e-74 281.2 307 48.5
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.0e-72 276.2 144 84.0
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.1e-71 274.2 180 67.8
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 7.3e-71 271.6 276 48.6
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 3.5e-65 252.7 176 69.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.7e-64 250.4 308 44.2
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 5.2e-61 238.8 290 46.2
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 9.2e-58 228.0 249 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.1e-53 214.5 147 61.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 6.4e-51 205.3 142 70.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.1e-50 204.5 248 46.8
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.3e-50 201.4 135 74.1
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.4e-45 186.8 156 60.9
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 6.0e-41 172.2 216 42.1
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.1e-33 147.1 110 60.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 6.2e-30 135.6 77 77.9
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.5e-28 131.0 72 76.4
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.5e-28 131.0 72 76.4
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.7e-27 127.5 71 78.9
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-20 104.8 102 56.9
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-20 104.4 75 70.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.0e-19 101.7 80 63.8
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.4e-18 97.8 80 62.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 5.5e-18 95.9 91 56.0
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.3e-15 86.3 47 85.1
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.1e-13 81.6 85 51.8
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 6.5e-11 72.4 65 58.5
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 8.5e-11 72.0 168 29.2
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 1.7e-06 57.8 50 60.0
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-06 56.6 83 48.2


User provided reference genes

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