Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 4.0e-234 814.3 391 100.0
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 8.3e-147 524.2 517 51.6
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.4e-133 479.6 632 43.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.0e-121 438.3 465 49.0
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.1e-119 434.1 465 48.6
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.1e-117 426.0 516 48.1
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.4e-101 373.2 515 41.6
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 3.8e-99 365.9 513 38.8
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.1e-98 364.4 519 39.1
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.5e-98 363.2 527 41.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.6e-97 359.0 510 40.4
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 7.9e-97 358.2 509 38.7
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.9e-95 353.6 501 40.9
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.3e-95 352.4 527 39.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 9.7e-95 351.3 472 42.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.8e-94 349.7 517 39.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 4.8e-94 349.0 513 38.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.1e-93 347.8 520 39.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.4e-93 346.7 515 38.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.9e-93 345.1 515 38.8
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 5.9e-92 342.0 514 38.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.7e-91 340.5 516 38.8
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.9e-91 339.7 522 38.3
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 6.5e-91 338.6 514 37.9
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 6.5e-91 338.6 472 39.8
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 8.5e-91 338.2 514 37.9
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 4.2e-90 335.9 468 41.5
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 7.2e-90 335.1 553 36.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.1e-89 333.6 470 39.6
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.7e-89 333.2 512 38.5
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 1.4e-88 330.9 484 38.0
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.8e-88 330.5 518 37.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.0e-87 327.0 517 38.1
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 9.7e-87 324.7 472 39.6
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.3e-86 324.3 526 36.3
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.3e-86 324.3 511 38.4
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.2e-86 323.6 517 37.3
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 3.7e-86 322.8 468 38.7
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 6.3e-86 322.0 519 37.6
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.1e-85 321.2 472 37.5
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 1.1e-85 321.2 468 38.7
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 4.1e-85 319.3 483 38.3
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 5.3e-85 318.9 470 39.1
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 5.3e-85 318.9 463 37.4
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.5e-84 317.4 499 36.9
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 4.5e-84 315.8 526 36.9
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 5.9e-84 315.5 475 37.5
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.7e-83 313.9 484 38.0
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.7e-83 313.9 474 37.8
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.9e-83 313.2 519 36.6
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 6.5e-83 312.0 519 36.0
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 6.5e-83 312.0 526 37.5
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.4e-82 310.8 526 37.1
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.9e-82 310.5 470 38.3
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 4.2e-82 309.3 507 37.9
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 5.5e-82 308.9 511 37.2
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.5e-82 308.9 524 35.3
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 9.4e-82 308.1 468 38.7
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 9.4e-82 308.1 511 37.4
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 9.4e-82 308.1 476 37.2
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 1.2e-81 307.8 530 35.7
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.6e-81 307.4 470 38.1
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 1.6e-81 307.4 462 39.2
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.1e-81 307.0 471 38.0
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.1e-81 307.0 467 37.9
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.7e-81 306.6 518 35.5
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.3e-80 303.5 510 37.5
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.1e-80 302.4 507 36.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 8.8e-80 301.6 508 37.2
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 8.8e-80 301.6 473 38.3
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 1.1e-79 301.2 468 38.5
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 1.1e-79 301.2 477 37.5
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.1e-79 301.2 507 36.7
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.5e-79 300.8 487 36.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.5e-79 300.8 487 36.8
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 3.3e-79 299.7 511 36.2
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 3.3e-79 299.7 511 36.2
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 3.7e-78 296.2 518 35.1
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 1.1e-77 294.7 463 38.7
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 1.4e-77 294.3 590 33.2
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.4e-77 293.5 541 35.7
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 4.1e-77 292.7 464 37.3
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 5.3e-77 292.4 475 37.9
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 7.0e-77 292.0 563 34.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 7.0e-77 292.0 466 38.0
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 1.7e-75 287.3 509 35.4
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 5.0e-75 285.8 518 34.9
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.0e-72 278.1 372 41.7
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.4e-69 267.7 500 35.6
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 4.1e-69 266.2 544 33.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 9.1e-69 265.0 469 35.8
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 8.5e-67 258.5 522 33.3
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.1e-65 253.8 473 34.7
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 8.5e-59 231.9 249 48.2
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-58 231.1 247 47.4
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.3e-56 223.8 249 49.0
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.3e-54 218.0 245 48.2
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.7e-51 207.6 536 29.5
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 7.3e-50 202.2 543 30.2
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 7.3e-50 202.2 223 44.4
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 3.0e-48 196.8 223 43.9
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 2.0e-47 194.1 252 46.0
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 7.8e-44 182.2 152 55.3
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 7.8e-44 182.2 168 53.0
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 7.8e-44 182.2 212 43.4
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.3e-43 180.6 248 43.1
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.8e-40 171.0 209 42.1
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 4.0e-40 169.9 524 26.7
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.2e-33 148.3 179 43.0
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.9e-30 137.1 83 73.5
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 8.6e-27 125.6 295 28.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.4e-23 113.2 324 30.2
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 4.4e-23 113.2 76 65.8
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.6e-17 94.7 115 44.3
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 8.1e-17 92.4 115 40.9
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 3.8e-14 83.6 61 59.0
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 2.4e-13 80.9 96 41.7
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.2e-13 80.5 70 55.7
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 5.4e-13 79.7 100 38.0
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.0e-11 73.9 61 55.7
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.5e-10 71.6 136 33.1
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 6.2e-09 66.2 76 43.4
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.5e-07 61.6 107 37.4


User provided reference genes

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