Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.1e-171 604.7 333 100.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.0e-134 481.9 335 77.0
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.9e-132 475.7 335 74.6
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 6.7e-121 438.0 344 68.3
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 8.5e-116 421.0 333 66.7
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 6.1e-98 361.7 341 58.4
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 6.1e-98 361.7 340 58.5
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-95 353.2 333 58.0
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.8e-95 352.8 341 57.5
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.7e-95 352.4 343 58.0
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 6.3e-95 351.7 349 55.9
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.1e-94 350.9 343 57.7
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.8e-94 350.1 350 56.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-94 350.1 345 56.5
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.1e-94 349.4 345 56.8
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 4.1e-94 349.0 344 57.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 5.3e-94 348.6 343 57.7
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 3.5e-93 345.9 335 55.8
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 5.9e-93 345.1 343 57.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.9e-93 345.1 343 57.1
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-92 344.0 342 57.0
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.2e-92 343.2 343 57.1
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 5.0e-92 342.0 343 55.7
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 6.5e-92 341.7 344 57.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 8.5e-92 341.3 343 56.9
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 8.5e-92 341.3 355 56.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.2e-90 337.4 342 56.1
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.6e-90 337.0 343 56.3
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.6e-90 335.9 341 55.7
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 4.7e-90 335.5 347 55.6
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 8.0e-90 334.7 346 55.5
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.0e-89 334.3 342 54.7
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.0e-89 334.3 344 57.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.3e-89 333.2 347 56.2
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 3.0e-89 332.8 348 54.6
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.8e-89 331.3 341 55.1
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.4e-88 329.3 341 55.4
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.4e-88 329.3 343 54.5
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 4.4e-88 328.9 339 55.5
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.7e-88 328.6 346 54.6
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.5e-88 328.2 341 54.8
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.7e-87 327.0 347 54.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.7e-87 327.0 342 54.7
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.2e-87 326.6 347 55.3
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.8e-87 326.2 341 55.1
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.8e-87 326.2 341 54.5
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 6.3e-87 325.1 349 54.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.1e-86 324.3 343 55.1
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.8e-86 323.6 350 55.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.4e-86 323.2 393 48.9
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 7.0e-86 321.6 347 55.0
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.2e-85 320.9 342 53.5
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.5e-85 319.3 343 54.5
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.0e-84 317.8 348 54.3
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 3.8e-84 315.8 345 52.2
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.8e-84 315.8 347 53.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.1e-83 314.3 346 52.9
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.2e-83 311.6 345 50.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 9.4e-83 311.2 341 52.5
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.6e-82 310.5 341 53.4
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 6.1e-82 308.5 342 51.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-81 307.8 340 52.9
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-81 307.0 388 49.7
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.3e-81 306.6 343 52.8
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.0e-81 306.2 343 52.8
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 5.2e-81 305.4 341 53.4
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.8e-81 304.7 344 51.5
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.2e-80 304.3 337 50.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.2e-80 304.3 346 52.9
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.5e-80 303.9 411 47.2
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.6e-80 303.1 360 54.7
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.6e-80 303.1 341 51.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.6e-80 303.1 331 54.7
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.6e-80 303.1 343 51.9
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.6e-80 303.1 343 51.9
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.4e-80 302.8 349 51.3
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.4e-80 302.8 349 51.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.4e-80 302.8 340 52.4
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 5.7e-80 302.0 342 51.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 9.8e-80 301.2 341 51.9
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.3e-79 300.8 338 51.2
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.2e-79 300.1 339 51.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.8e-79 299.7 349 49.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.7e-79 299.3 330 52.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-79 299.3 347 52.4
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 4.8e-79 298.9 343 51.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.3e-79 298.1 346 52.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.1e-78 297.7 341 50.7
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.4e-78 297.4 343 51.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.8e-78 297.0 412 46.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.8e-78 297.0 346 53.8
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.4e-78 296.6 342 50.0
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.1e-78 296.2 343 51.0
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 5.4e-78 295.4 341 51.9
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.4e-78 295.4 340 51.5
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.2e-77 294.3 346 51.7
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.6e-77 293.9 348 50.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 7.7e-77 291.6 344 50.9
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.7e-77 291.6 343 50.4
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 7.7e-77 291.6 344 50.3
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-75 287.7 329 51.7
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.5e-75 285.4 339 50.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 5.5e-75 285.4 339 51.0
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 5.5e-75 285.4 341 49.9
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.5e-75 285.4 344 49.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.2e-74 284.3 353 49.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.6e-74 283.9 346 49.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-74 283.5 340 50.6
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.1e-74 283.5 340 50.6
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.8e-74 283.1 341 49.9
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.7e-74 282.3 345 49.9
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.0e-73 281.2 338 50.0
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.8e-73 280.4 343 50.1
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.8e-73 280.4 348 47.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.5e-72 277.3 330 48.5
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 3.4e-72 276.2 291 54.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.4e-72 275.8 341 49.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.3e-71 274.2 338 49.7
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.3e-71 274.2 347 48.1
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.2e-71 273.5 333 48.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 4.9e-71 272.3 340 49.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 6.3e-71 271.9 256 57.4
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 6.3e-71 271.9 336 48.8
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 8.3e-71 271.6 328 47.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-70 268.5 322 49.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 7.0e-70 268.5 322 49.4
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 9.2e-70 268.1 336 48.2
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 9.2e-70 268.1 347 48.1
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-69 266.9 335 47.8
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-69 266.9 323 49.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.5e-69 265.8 324 49.7
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 5.9e-69 265.4 343 48.1
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 7.8e-69 265.0 336 47.9
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.0e-68 264.6 342 47.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-68 263.5 349 48.1
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.7e-66 255.8 351 48.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.1e-65 253.1 317 48.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.6e-64 250.0 259 53.7
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.1e-62 244.6 259 55.6
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.6e-61 240.7 243 55.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.9e-60 236.1 275 52.4
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 6.2e-58 228.8 333 45.6
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.4e-54 217.6 206 57.8
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.3e-49 200.3 336 41.1
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.7e-47 193.0 258 47.3
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.2e-32 144.8 336 34.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 7.1e-30 135.6 388 30.4
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.0e-28 130.2 319 33.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.5e-27 127.9 216 39.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.6e-21 107.8 150 48.0
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 4.6e-21 106.3 152 42.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.8e-16 89.4 150 36.0
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 2.2e-15 87.4 235 31.9
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 7.4e-11 72.4 173 34.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 3.1e-09 67.0 87 47.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.9e-07 60.5 144 32.6
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 6.5e-07 59.3 272 26.5
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 4.2e-06 56.6 85 38.8


User provided reference genes

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