Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 5.0e-82 307.8 158 100.0
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.3e-61 240.0 135 82.2
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.7e-61 239.6 134 82.8
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.6e-59 233.0 135 81.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.9e-58 228.8 135 80.7
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.2e-57 224.9 133 78.2
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.5e-57 224.6 152 71.1
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.7e-56 222.2 133 74.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.6e-56 221.9 134 73.1
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 4.7e-56 221.5 134 73.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.0e-55 220.3 133 77.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.8e-55 219.5 152 68.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 4.0e-55 218.4 133 71.4
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 5.2e-55 218.0 132 75.8
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 5.2e-55 218.0 134 73.1
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 5.2e-55 218.0 133 75.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.0e-54 216.1 133 73.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.6e-54 215.7 133 72.9
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 3.3e-54 215.3 133 70.7
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-54 215.3 133 70.7
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 5.7e-54 214.5 133 71.4
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.7e-54 214.5 129 75.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 5.7e-54 214.5 135 71.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 7.5e-54 214.2 133 70.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.5e-54 214.2 133 69.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.3e-53 213.4 132 73.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.2e-53 212.6 133 74.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 2.2e-53 212.6 137 74.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-53 212.2 133 69.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.8e-53 212.2 134 76.1
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 4.8e-53 211.5 135 77.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 6.3e-53 211.1 143 69.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.3e-53 211.1 134 71.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 6.3e-53 211.1 134 70.9
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 8.2e-53 210.7 133 73.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-52 210.3 133 73.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.1e-52 210.3 132 71.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.4e-52 209.9 143 68.5
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.4e-52 209.9 136 71.3
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.1e-52 208.8 136 74.3
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 5.3e-52 208.0 133 73.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 7.0e-52 207.6 134 70.9
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 9.1e-52 207.2 133 72.9
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.2e-51 206.8 132 69.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.2e-51 206.8 135 71.9
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.2e-51 206.8 135 71.9
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.6e-51 206.5 136 69.1
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.0e-51 206.1 132 69.7
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.0e-51 206.1 134 73.1
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.5e-51 205.3 134 72.4
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.5e-51 204.9 134 70.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 7.7e-51 204.1 136 69.1
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-50 203.4 136 69.9
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.7e-50 203.0 136 69.9
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.2e-50 202.6 158 63.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.8e-50 201.8 135 68.1
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.8e-50 201.8 135 68.1
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.8e-50 201.8 135 68.1
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 8.5e-50 200.7 134 67.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 8.5e-50 200.7 132 67.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.1e-49 200.3 134 67.9
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.1e-49 200.3 134 67.9
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-49 200.3 134 70.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.5e-49 199.9 134 67.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-49 199.5 135 66.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-49 199.5 135 66.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.5e-49 199.1 133 66.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-49 199.1 133 66.9
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.5e-49 199.1 135 66.7
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 3.2e-49 198.7 132 68.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.2e-49 198.4 135 64.4
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 7.2e-49 197.6 152 63.8
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 9.4e-49 197.2 132 70.5
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.2e-48 196.8 134 64.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-48 196.4 134 69.4
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.6e-48 196.4 134 70.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.1e-48 194.5 190 53.2
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 6.1e-48 194.5 128 72.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 6.1e-48 194.5 136 66.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.1e-48 194.5 133 63.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.0e-47 193.7 133 69.2
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.0e-47 193.7 149 61.1
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-47 193.7 132 68.2
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-47 193.7 132 68.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.0e-47 193.7 149 65.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.4e-47 193.4 132 66.7
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 2.3e-47 192.6 154 58.4
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 6.8e-47 191.0 134 64.9
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 8.8e-47 190.7 133 64.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.8e-47 190.7 133 64.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-46 190.3 132 66.7
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.2e-46 190.3 137 67.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-46 189.5 132 66.7
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.0e-46 189.5 134 68.7
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.4e-46 188.7 136 64.7
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.4e-46 188.7 136 64.7
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-46 188.7 133 64.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-46 188.3 135 68.1
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.8e-46 187.2 125 67.2
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 9.8e-46 187.2 132 65.9
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.3e-45 186.8 132 66.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.7e-45 186.4 125 67.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.7e-45 186.4 130 66.2
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-45 185.7 134 64.9
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.8e-45 185.7 132 65.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.7e-45 185.3 136 67.6
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.1e-44 183.7 132 60.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.1e-44 183.7 135 65.9
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-44 183.0 152 54.6
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-44 182.6 133 64.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-44 181.0 133 64.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 7.0e-44 181.0 129 63.6
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-43 180.3 133 64.7
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-43 180.3 133 63.9
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.0e-43 179.5 151 53.6
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 2.7e-43 179.1 133 59.4
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.7e-43 179.1 133 63.2
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.5e-43 178.7 133 60.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 5.9e-43 177.9 135 64.4
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.2e-42 176.0 132 57.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.2e-42 176.0 132 57.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 5.0e-42 174.9 132 60.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.9e-41 172.9 132 59.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 5.5e-41 171.4 157 53.5
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 5.5e-41 171.4 132 66.7
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.2e-41 171.0 135 56.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-40 170.2 134 58.2
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.6e-40 169.9 133 60.2
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-40 169.1 132 61.4
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.6e-40 168.7 134 59.0
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 4.7e-40 168.3 134 57.5
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 8.0e-40 167.5 97 73.2
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.0e-39 167.2 135 61.5
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 3.0e-39 165.6 135 60.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 5.2e-39 164.9 122 67.2
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 8.8e-39 164.1 129 54.3
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.8e-39 164.1 134 55.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-38 163.3 135 60.7
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.7e-38 161.4 200 44.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 7.5e-38 161.0 135 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.8e-37 159.1 132 53.8
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.8e-37 159.1 134 59.7
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.3e-34 149.4 132 49.2
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 3.8e-34 148.7 110 67.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 5.0e-34 148.3 132 50.8
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-31 139.8 133 54.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.3e-31 139.4 96 62.5
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.3e-31 139.4 134 49.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.6e-30 136.0 131 51.1
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-28 129.8 133 50.4
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.4e-28 129.4 141 46.8
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.1e-28 128.6 132 47.7
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 9.5e-25 117.5 123 52.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.3e-21 107.1 115 47.0
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.0e-20 101.3 102 51.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.0e-19 99.8 72 55.6
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 6.0e-19 98.2 71 64.8
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.3e-18 96.3 123 40.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-17 94.0 113 43.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-17 92.4 53 66.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.2e-16 90.5 50 70.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 8.1e-16 87.8 90 51.1
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-15 85.9 62 71.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.2e-13 79.7 99 44.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-13 79.3 53 75.5
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-13 78.6 80 56.2
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 6.0e-11 71.6 40 65.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 1.7e-10 70.1 65 53.8
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.9e-09 66.6 72 54.2


User provided reference genes

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