Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 2.8e-84 315.5 185 100.0
EL10Ac6g14549 Beta vulgaris HOM05D007408 ORTHO05D009325 2.3e-22 109.8 158 44.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 4.4e-21 105.5 182 36.8
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 7.5e-21 104.8 185 37.3
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 9.7e-21 104.4 193 34.7
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.8e-20 102.8 181 36.5
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.4e-19 100.5 185 34.1
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 1.8e-19 100.1 181 35.4
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 3.1e-19 99.4 174 34.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 7.0e-19 98.2 181 33.1
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.6e-18 97.1 139 38.1
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.6e-18 97.1 139 38.1
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.6e-18 97.1 139 38.1
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.5e-18 95.9 143 39.9
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 3.5e-18 95.9 140 41.4
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 1.0e-17 94.4 183 32.8
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 2.2e-17 93.2 151 36.4
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.9e-17 92.8 140 40.7
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 6.5e-17 91.7 161 34.2
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 6.5e-17 91.7 182 34.6
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 7.2e-16 88.2 143 36.4
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 7.2e-16 88.2 140 39.3
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 7.2e-16 88.2 184 34.2
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 9.4e-16 87.8 151 37.1
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 9.4e-16 87.8 151 37.1
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 9.4e-16 87.8 185 32.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.6e-15 87.0 138 37.0
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 2.1e-15 86.7 148 35.8
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 2.1e-15 86.7 151 37.1
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 2.1e-15 86.7 140 39.3
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 8.0e-15 84.7 147 35.4
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.4e-14 84.0 148 31.1
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 1.4e-14 84.0 154 35.7
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.4e-14 84.0 176 33.0
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 3.0e-14 82.8 184 33.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 4.0e-14 82.4 150 34.0
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 4.0e-14 82.4 140 35.0
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 8.8e-14 81.3 156 37.8
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.5e-13 80.5 146 30.1
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 2.6e-13 79.7 141 36.2
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.4e-13 79.3 177 29.9
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 5.7e-13 78.6 172 30.8
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 5.7e-13 78.6 149 32.2
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 7.5e-13 78.2 154 35.7
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 7.5e-13 78.2 167 34.7
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 1.7e-12 77.0 154 35.7
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.2e-12 76.6 185 30.8
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 2.2e-12 76.6 149 32.2
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.8e-12 76.3 154 33.8
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 3.7e-12 75.9 179 29.6
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 6.3e-12 75.1 172 31.4
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 8.3e-12 74.7 151 29.1
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 8.3e-12 74.7 133 35.3
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-11 74.3 151 35.1
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.1e-11 74.3 151 35.1
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 1.1e-11 74.3 167 32.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.4e-11 73.9 139 33.8
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 2.4e-11 73.2 148 29.7
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 4.1e-11 72.4 154 31.2
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 7.0e-11 71.6 154 33.1
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 9.1e-11 71.2 148 32.4
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 9.1e-11 71.2 148 32.4
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 9.1e-11 71.2 148 32.4
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-10 70.9 151 33.1
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-10 70.9 151 33.1
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 1.2e-10 70.9 151 33.1
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.6e-10 70.5 141 34.0
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 2.0e-10 70.1 142 30.3
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.0e-10 70.1 145 29.7
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 3.5e-10 69.3 148 31.1
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 3.5e-10 69.3 148 31.1
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 3.5e-10 69.3 178 29.8
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 3.5e-10 69.3 141 33.3
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 3.5e-10 69.3 141 33.3
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 1.0e-09 67.8 62 53.2
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-09 67.4 148 33.8
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-09 67.4 147 27.9
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-09 67.4 147 27.9
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.7e-09 67.0 188 31.4
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 2.3e-09 66.6 148 29.1
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 2.3e-09 66.6 137 32.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 3.8e-09 65.9 146 27.4
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 3.8e-09 65.9 144 31.2
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 3.8e-09 65.9 144 31.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.0e-09 65.5 137 29.9
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 6.5e-09 65.1 148 29.1
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 6.5e-09 65.1 146 27.4
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 6.5e-09 65.1 50 52.0
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 8.6e-09 64.7 149 28.2
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-08 64.3 137 29.9
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.1e-08 64.3 137 29.9
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 2.5e-08 63.2 175 29.7
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 3.2e-08 62.8 137 29.9
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 5.5e-08 62.0 137 29.2
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-08 61.2 146 26.0
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 2.8e-07 59.7 147 32.0
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 6.1e-07 58.5 146 28.1
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 6.1e-07 58.5 137 29.9
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 8.0e-07 58.2 143 32.2
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.0e-06 57.8 144 29.9
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 1.0e-06 57.8 158 27.8
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 1.8e-06 57.0 56 50.0
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 5.2e-06 55.5 150 28.0


User provided reference genes

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