Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 9.2e-173 610.1 311 100.0
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 5.5e-109 398.3 352 64.8
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 1.2e-108 397.1 356 62.4
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 8.5e-102 374.4 305 66.6
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 7.7e-95 351.3 308 63.0
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 2.2e-94 349.7 350 56.9
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 8.5e-94 347.8 345 57.1
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 1.9e-93 346.7 351 58.4
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 5.5e-93 345.1 346 57.5
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 7.2e-93 344.7 326 59.2
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 1.2e-92 344.0 346 57.2
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 1.2e-92 344.0 323 59.1
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 1.6e-92 343.6 350 56.0
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 2.1e-92 343.2 320 59.7
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 3.6e-92 342.4 315 60.3
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 6.1e-92 341.7 289 63.3
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 6.1e-92 341.7 313 60.4
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 8.0e-92 341.3 345 57.1
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.8e-91 340.1 299 61.9
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 3.0e-91 339.3 331 58.3
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 3.9e-91 339.0 215 76.3
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 5.2e-91 338.6 283 64.7
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 1.1e-90 337.4 314 59.9
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 1.5e-90 337.0 345 55.9
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 1.5e-90 337.0 299 61.2
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 2.6e-90 336.3 282 63.8
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 5.7e-90 335.1 291 62.5
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 5.7e-90 335.1 211 77.7
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 7.4e-90 334.7 287 62.7
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 7.4e-90 334.7 291 62.5
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 9.7e-90 334.3 299 60.9
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 2.2e-89 333.2 306 61.1
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 2.2e-89 333.2 345 56.8
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 6.3e-89 331.6 211 77.3
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 8.2e-89 331.3 291 61.9
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 1.4e-88 330.5 281 60.5
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 1.8e-88 330.1 227 74.0
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 2.4e-88 329.7 348 54.0
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 2.4e-88 329.7 291 59.8
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 4.1e-88 328.9 348 54.0
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 5.3e-88 328.6 347 54.5
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 5.3e-88 328.6 329 55.6
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 7.0e-88 328.2 284 63.4
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 7.0e-88 328.2 289 61.2
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 1.2e-87 327.4 326 57.4
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 1.2e-87 327.4 336 56.2
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 1.2e-87 327.4 333 56.8
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 1.6e-87 327.0 290 59.3
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 2.6e-87 326.2 215 73.0
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 4.5e-87 325.5 211 75.4
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 5.9e-87 325.1 211 74.9
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 1.0e-86 324.3 211 75.8
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 1.3e-86 323.9 320 56.9
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 2.9e-86 322.8 215 74.4
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 2.9e-86 322.8 345 54.8
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 5.0e-86 322.0 350 54.0
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 1.5e-85 320.5 294 60.2
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 1.5e-85 320.5 219 69.9
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 3.2e-85 319.3 320 55.0
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 5.5e-85 318.5 320 54.4
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 5.5e-85 318.5 347 53.6
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 5.5e-85 318.5 217 73.3
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 9.4e-85 317.8 316 53.8
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 1.2e-84 317.4 319 55.2
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 2.7e-84 316.2 313 56.2
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 2.7e-84 316.2 242 66.5
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 2.7e-84 316.2 289 59.2
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 8.0e-84 314.7 313 57.5
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 1.0e-83 314.3 319 55.2
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 1.4e-83 313.9 220 71.4
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 3.0e-83 312.8 319 54.5
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 3.0e-83 312.8 315 55.2
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 5.2e-83 312.0 211 73.5
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 8.8e-83 311.2 357 52.7
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 8.8e-83 311.2 219 69.9
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 2.0e-82 310.1 322 55.0
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 2.6e-82 309.7 332 53.3
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 3.4e-82 309.3 313 56.9
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 5.7e-82 308.5 308 56.5
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 7.5e-82 308.1 301 57.8
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 9.7e-82 307.8 226 68.1
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 2.8e-81 306.2 291 59.1
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 4.8e-81 305.4 266 62.0
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 4.8e-81 305.4 415 46.7
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 8.3e-81 304.7 332 54.8
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 1.8e-80 303.5 322 54.7
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 5.9e-79 298.5 281 57.7
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 1.7e-78 297.0 215 67.4
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 1.1e-77 294.3 389 48.6
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 1.5e-77 293.9 202 71.3
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 5.5e-77 292.0 338 50.9
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 2.0e-71 273.5 192 71.4
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 4.7e-68 262.3 260 56.5
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 8.9e-67 258.1 218 56.4
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 7.5e-66 255.0 225 56.0
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 1.4e-64 250.8 230 60.0
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 2.7e-63 246.5 217 59.4
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 2.5e-61 240.0 212 52.4
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 3.6e-60 236.1 243 57.2
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.8e-59 233.8 198 57.1
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 4.9e-57 225.7 232 55.6
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 1.0e-54 218.0 147 71.4
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 8.6e-54 214.9 155 69.0
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 1.1e-51 208.0 135 74.8
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.1e-51 208.0 247 49.4
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 1.2e-50 204.5 140 70.7
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.3e-46 191.0 140 64.3
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 1.9e-45 187.2 120 70.8
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 6.8e-43 178.7 227 43.2
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 2.8e-36 156.8 101 71.3
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.7e-25 120.9 206 35.9
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 4.2e-24 116.3 231 32.9
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 4.8e-20 102.8 215 34.4
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 6.4e-17 92.4 60 73.3
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 1.5e-13 81.3 99 49.5
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 2.6e-10 70.5 53 60.4


User provided reference genes

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