Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.3e-225 786.2 445 100.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 8.9e-153 544.3 447 66.9
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.7e-152 541.6 447 66.9
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.4e-150 537.0 447 63.5
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.3e-124 450.7 446 53.1
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.3e-123 444.9 445 52.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 9.5e-123 444.5 449 59.7
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.8e-121 440.3 445 54.4
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.0e-120 436.8 445 51.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.6e-120 436.4 442 50.9
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.4e-120 436.0 442 50.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.2e-119 433.3 445 51.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-118 430.6 446 51.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.2e-118 429.5 449 55.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 4.2e-118 429.1 446 56.7
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 7.1e-118 428.3 450 51.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.7e-117 426.4 447 51.7
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.0e-116 424.5 446 54.7
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-116 424.1 444 50.7
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.7e-116 423.7 448 51.1
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 5.1e-116 422.2 446 51.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.1e-115 421.0 456 52.2
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.3e-115 419.5 448 51.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 4.3e-115 419.1 447 48.8
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.6e-114 417.2 448 50.7
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-114 417.2 455 52.1
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.1e-114 416.8 455 52.1
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 3.6e-114 416.0 448 50.7
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.6e-114 416.0 446 49.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 8.1e-114 414.8 450 48.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 8.1e-114 414.8 449 49.9
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.1e-113 414.5 448 48.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.4e-113 413.3 449 54.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.0e-113 411.4 442 50.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.0e-112 410.2 447 54.8
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.6e-112 409.8 454 49.3
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.4e-112 409.5 449 50.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 4.4e-112 409.1 449 53.9
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 9.9e-112 407.9 449 54.1
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 3.8e-111 406.0 449 52.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.9e-111 405.6 446 53.6
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.4e-110 404.1 441 54.0
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.9e-110 403.7 447 51.2
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.4e-110 403.3 448 52.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 2.4e-110 403.3 454 48.9
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 3.2e-110 402.9 464 48.1
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 5.4e-110 402.1 450 47.6
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 7.1e-110 401.7 441 48.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 7.1e-110 401.7 441 49.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.7e-109 399.8 450 54.4
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 4.6e-109 399.1 451 53.0
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 7.8e-109 398.3 441 48.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.0e-108 397.9 445 49.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.3e-108 396.7 441 53.1
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.0e-108 396.4 448 52.7
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 3.9e-108 396.0 451 52.1
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 5.1e-108 395.6 445 48.5
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.1e-107 394.4 460 53.9
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.9e-107 393.7 452 47.3
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.9e-107 393.7 452 49.8
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 2.5e-107 393.3 445 49.4
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.3e-107 392.5 451 47.9
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 5.6e-107 392.1 451 48.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 7.3e-107 391.7 446 51.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.3e-107 391.7 448 53.3
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 9.6e-107 391.3 452 51.3
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 9.6e-107 391.3 449 51.9
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.6e-107 391.3 446 48.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.6e-106 390.6 446 48.7
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.1e-106 390.2 448 47.8
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 6.2e-106 388.7 473 48.4
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 6.2e-106 388.7 452 49.1
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 8.1e-106 388.3 455 52.5
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.4e-105 387.5 439 51.7
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.1e-105 386.3 449 51.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.2e-104 384.4 451 51.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.6e-104 383.3 447 47.4
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.4e-104 382.9 447 51.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.3e-103 380.9 449 51.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.2e-103 380.2 457 50.3
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 2.9e-103 379.8 445 46.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 8.4e-103 378.3 458 48.3
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.1e-102 377.9 445 46.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.4e-102 377.5 446 46.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.4e-102 376.7 510 43.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 9.3e-102 374.8 444 48.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.2e-101 374.4 444 46.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 7.9e-101 371.7 442 52.0
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.9e-99 367.1 433 45.5
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.8e-98 363.2 451 44.1
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 4.8e-98 362.5 451 44.1
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.4e-97 360.9 449 43.9
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.6e-96 356.7 451 45.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.0e-95 354.8 474 43.9
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.4e-94 350.9 442 50.0
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 6.0e-93 345.5 448 48.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 7.9e-93 345.1 448 48.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.0e-92 344.7 449 48.1
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 2.8e-90 336.7 448 45.5
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.4e-89 334.3 446 43.9
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.1e-89 333.2 496 38.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.6e-88 328.6 441 44.0
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 8.2e-82 308.5 561 37.4
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 8.2e-82 308.5 355 45.9
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 4.1e-81 306.2 453 41.3
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 5.0e-79 299.3 384 49.2
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.0e-76 291.6 472 39.4
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 3.9e-76 289.7 383 48.6
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.0e-75 287.3 252 61.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.5e-75 287.0 383 47.5
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.1e-53 214.2 448 35.3
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-50 204.9 235 48.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-50 203.8 235 48.9
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.7e-50 203.4 234 49.1
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.7e-50 203.4 234 49.1
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.1e-49 199.9 229 49.3
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.1e-49 198.7 238 47.5
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.4e-43 179.9 159 56.6
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 9.1e-41 172.2 211 46.4
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.0e-40 171.0 234 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.3e-39 168.3 341 32.0
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 4.2e-38 163.3 161 52.8
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-37 161.8 211 46.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.2e-37 161.8 344 31.4
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.2e-36 156.4 147 52.4
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-35 155.2 211 46.0
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.5e-30 138.3 111 61.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.3e-30 136.7 235 37.0
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.6e-29 134.8 306 33.7
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.2e-28 129.8 235 37.0
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 7.0e-25 119.4 108 57.4
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.0e-24 117.9 354 24.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.5e-24 117.1 357 25.5
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.3e-23 114.4 98 57.1
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.9e-18 96.7 376 24.2
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.2e-16 92.0 222 33.3
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.1e-13 81.3 98 40.8
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.8e-13 80.9 170 37.6
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.1e-13 79.3 93 41.9
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.9e-10 70.9 78 41.0


User provided reference genes

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