Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.4e-201 705.3 362 100.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.6e-163 578.9 319 91.2
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.2e-162 575.9 320 90.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.0e-150 536.2 320 84.1
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.8e-149 532.3 361 74.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.5e-147 525.4 355 75.5
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.7e-146 523.1 353 74.8
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.9e-145 519.6 325 79.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.9e-145 519.6 355 74.4
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.2e-145 517.7 345 76.5
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-144 516.9 320 79.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.6e-144 516.5 360 71.7
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 2.7e-144 515.8 360 71.1
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 8.0e-144 514.2 354 73.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 8.0e-144 514.2 347 74.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.0e-143 513.8 347 73.5
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 2.3e-143 512.7 354 72.9
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-143 512.7 354 73.4
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.0e-143 512.3 355 73.0
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.0e-143 511.9 355 73.2
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 4.0e-143 511.9 354 73.2
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-142 510.0 313 80.5
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.4e-142 508.8 326 76.7
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.4e-142 508.4 354 72.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 9.8e-142 507.3 357 72.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-141 506.5 354 72.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-141 505.8 350 73.7
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.8e-141 505.0 325 77.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 6.3e-141 504.6 362 70.7
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 8.3e-141 504.2 362 70.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 8.3e-141 504.2 359 71.6
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 8.3e-141 504.2 312 79.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-140 503.4 329 76.3
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-140 503.4 329 76.3
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.4e-140 502.7 353 72.2
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 4.1e-140 501.9 342 73.7
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.4e-140 501.5 347 74.4
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 5.4e-140 501.5 360 70.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 5.4e-140 501.5 358 72.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.0e-140 501.1 362 70.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 7.0e-140 501.1 354 70.3
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.0e-140 501.1 353 72.5
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 9.1e-140 500.7 327 74.3
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 9.1e-140 500.7 348 72.4
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-139 500.4 358 70.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-139 500.4 358 70.4
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.0e-139 499.6 351 72.6
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 2.0e-139 499.6 348 74.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.5e-139 498.8 342 74.6
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 5.9e-139 498.0 365 70.7
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 7.7e-139 497.7 352 73.9
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.0e-138 497.3 359 72.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-138 497.3 353 72.2
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.3e-138 496.9 353 71.7
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.3e-138 496.9 357 72.0
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.7e-138 496.5 350 71.7
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.7e-138 496.5 326 76.4
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.2e-138 496.1 322 76.1
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.2e-138 496.1 349 72.2
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.1e-137 493.8 359 70.2
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.5e-137 493.4 310 79.0
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.2e-137 492.3 358 69.8
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.2e-137 491.9 358 70.4
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.5e-137 491.5 358 70.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 9.5e-137 490.7 312 77.9
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.2e-136 490.3 346 73.1
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 2.1e-136 489.6 296 80.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 4.7e-136 488.4 362 68.2
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 6.1e-136 488.0 358 70.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 6.1e-136 488.0 358 70.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 6.1e-136 488.0 358 70.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 8.0e-136 487.6 346 72.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.0e-135 487.3 359 69.4
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.0e-135 487.3 355 69.3
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.0e-135 487.3 350 72.0
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.4e-135 486.9 359 69.4
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.3e-135 486.1 357 69.7
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.3e-135 486.1 328 75.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 3.0e-135 485.7 358 70.4
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 3.0e-135 485.7 356 72.5
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.0e-135 485.3 358 68.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.2e-134 483.8 359 69.1
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.5e-134 483.4 290 81.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.0e-134 483.0 374 67.9
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.4e-134 481.9 358 68.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.4e-134 481.9 358 68.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.4e-134 481.9 358 68.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 5.7e-134 481.5 356 68.5
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.3e-133 480.3 337 73.0
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 8.3e-133 477.6 326 74.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-132 477.2 348 71.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.6e-131 473.4 330 71.8
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.6e-131 473.4 308 76.3
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 5.9e-131 471.5 353 68.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.5e-129 466.1 344 70.3
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.3e-129 465.3 343 68.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.0e-127 460.7 338 71.3
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.0e-127 459.1 343 67.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-127 458.0 306 75.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.5e-126 456.8 335 71.6
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.7e-126 454.9 307 72.0
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 7.5e-126 454.5 313 73.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.3e-125 453.8 347 68.6
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.9e-125 451.8 380 63.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.4e-124 450.3 334 67.1
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.2e-124 447.6 314 74.5
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.1e-121 440.7 314 71.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.5e-121 440.3 337 65.6
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 5.6e-121 438.3 325 68.0
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.6e-120 436.8 346 65.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.6e-120 436.8 366 64.8
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.1e-120 436.4 368 66.3
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.4e-119 433.7 335 65.4
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.9e-117 426.0 300 73.0
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 8.3e-117 424.5 274 76.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.1e-113 414.1 398 58.5
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.6e-113 411.8 353 63.5
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 7.3e-113 411.4 316 67.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 7.3e-113 411.4 297 72.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 6.2e-112 408.3 294 67.3
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.1e-112 407.9 292 72.9
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.3e-111 406.4 254 79.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-106 390.6 358 57.8
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-106 390.6 358 57.8
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.7e-104 382.1 242 77.3
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.1e-104 381.3 240 75.8
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.8e-103 378.3 355 59.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.4e-100 369.8 235 77.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 5.4e-100 368.6 327 60.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 7.8e-99 364.8 299 64.2
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.9e-93 346.3 231 73.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.4e-87 326.6 212 73.6
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.0e-86 323.6 218 72.5
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-81 306.6 233 69.5
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.4e-79 300.1 357 48.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.7e-75 286.6 177 78.0
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.4e-73 278.5 197 71.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.2e-68 263.1 262 57.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 9.0e-63 245.0 179 70.9
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.4e-55 220.3 167 69.5
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-40 170.6 126 69.8
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-39 168.3 127 66.9
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-36 157.1 125 60.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-35 154.1 117 64.1
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.4e-31 141.4 88 75.0
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.4e-31 140.6 95 73.7
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 7.7e-30 135.6 117 65.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.1e-28 131.7 124 59.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 7.2e-28 129.0 131 58.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 8.8e-26 122.1 313 29.1
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-25 119.8 87 65.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.8e-21 106.7 86 61.6
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 3.6e-19 100.1 97 59.8
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.0e-18 96.7 88 59.1
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.2e-18 96.3 69 63.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-17 95.1 57 70.2
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-15 87.8 79 65.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 5.9e-14 82.8 52 69.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 4.3e-12 76.6 70 64.3


User provided reference genes

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