Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126850 Amaranthus hybridus HOM05D003787 ORTHO05D001736 4.4e-164 581.3 299 100.0
AUR62007913 Chenopodium quinoa HOM05D000094 ORTHO05D002350 3.1e-40 169.9 357 38.7
AUR62003095 Chenopodium quinoa HOM05D000094 ORTHO05D002350 1.1e-26 124.8 216 39.8
Sc04g0007550 Simmondsia chinensis HOM05D003787 ORTHO05D001736 2.0e-15 87.4 171 39.2
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 7.8e-12 75.5 113 41.6
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.7e-11 74.3 154 37.7
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 5.1e-11 72.8 156 37.2
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 6.6e-11 72.4 111 43.2
Sc11g0002500 Simmondsia chinensis HOM05D003787 ORTHO05D001736 8.7e-11 72.0 184 32.1
Sc14g0007980 Simmondsia chinensis HOM05D003787 ORTHO05D001736 1.1e-10 71.6 146 37.0
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.1e-10 71.6 77 50.6
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.9e-10 70.9 122 41.0
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.9e-10 70.9 129 37.2
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 2.5e-10 70.5 69 62.3
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.3e-10 70.1 87 50.6
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 3.3e-10 70.1 78 53.8
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.3e-10 70.1 142 36.6
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 3.3e-10 70.1 54 61.1
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 5.6e-10 69.3 83 50.6
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 5.6e-10 69.3 160 37.5
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.6e-09 67.8 117 40.2
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 2.1e-09 67.4 90 50.0
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.8e-09 67.0 101 42.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.8e-09 67.0 74 55.4
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 2.8e-09 67.0 149 32.9
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.8e-09 67.0 63 55.6
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 3.6e-09 66.6 84 46.4
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 3.6e-09 66.6 84 46.4
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 4.8e-09 66.2 82 48.8
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 4.8e-09 66.2 156 30.8
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 4.8e-09 66.2 75 52.0
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 6.2e-09 65.9 68 52.9
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 6.2e-09 65.9 57 59.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 6.2e-09 65.9 243 30.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 8.1e-09 65.5 67 52.2
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 8.1e-09 65.5 140 32.9
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 8.1e-09 65.5 59 54.2
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 8.1e-09 65.5 148 37.2
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 8.1e-09 65.5 73 50.7
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 8.1e-09 65.5 93 47.3
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.1e-08 65.1 99 45.5
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.1e-08 65.1 75 45.3
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.1e-08 65.1 170 34.1
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.4e-08 64.7 110 38.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.4e-08 64.7 69 55.1
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.4e-08 64.7 69 55.1
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.4e-08 64.7 69 55.1
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.4e-08 64.7 69 55.1
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.4e-08 64.7 122 36.9
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.4e-08 64.7 173 30.1
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 1.4e-08 64.7 227 32.6
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.4e-08 64.7 66 56.1
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.4e-08 64.7 150 28.7
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.4e-08 64.7 68 50.0
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 2.4e-08 63.9 73 50.7
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.1e-08 63.5 73 56.2
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 3.1e-08 63.5 148 33.8
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.1e-08 63.5 66 54.5
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.1e-08 63.5 163 37.4
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 3.1e-08 63.5 75 53.3
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 4.0e-08 63.2 69 55.1
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 4.0e-08 63.2 131 38.2
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 4.0e-08 63.2 144 35.4
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.0e-08 63.2 226 29.6
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 5.3e-08 62.8 65 53.8
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 5.3e-08 62.8 131 39.7
Gohir.D12G164300 Gossypium hirsutum HOM05D039012 ORTHO05D001736 5.3e-08 62.8 239 28.5
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 5.3e-08 62.8 240 27.9
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 5.3e-08 62.8 143 34.3
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 5.3e-08 62.8 144 38.2
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 5.3e-08 62.8 142 35.9
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 9.0e-08 62.0 169 31.4
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 9.0e-08 62.0 74 48.6
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 9.0e-08 62.0 119 35.3
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.2e-07 61.6 100 43.0
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.2e-07 61.6 74 48.6
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.5e-07 61.2 130 34.6
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.5e-07 61.2 222 31.1
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 1.5e-07 61.2 95 41.1
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.5e-07 61.2 137 36.5
Gohir.D13G082500 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.0e-07 60.8 69 49.3
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.0e-07 60.8 156 32.7
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.0e-07 60.8 108 43.5
THA.LOC104800368 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 2.0e-07 60.8 61 50.8
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 2.0e-07 60.8 66 53.0
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.6e-07 60.5 144 31.2
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.6e-07 60.5 69 49.3
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 2.6e-07 60.5 73 45.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.6e-07 60.5 144 35.4
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 3.4e-07 60.1 103 35.9
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 3.4e-07 60.1 92 45.7
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.4e-07 60.1 157 35.0
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 3.4e-07 60.1 98 40.8
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 4.4e-07 59.7 67 49.3
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.4e-07 59.7 99 41.4
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 4.4e-07 59.7 53 54.7
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 4.4e-07 59.7 63 58.7
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 5.8e-07 59.3 64 50.0
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 5.8e-07 59.3 72 44.4
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 5.8e-07 59.3 66 53.0
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 5.8e-07 59.3 187 31.6
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.8e-07 59.3 106 40.6
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 5.8e-07 59.3 117 38.5
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 5.8e-07 59.3 61 50.8
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 5.8e-07 59.3 142 28.9
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 5.8e-07 59.3 218 29.4
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 7.6e-07 58.9 215 26.0
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 7.6e-07 58.9 68 57.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 7.6e-07 58.9 61 52.5
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 7.6e-07 58.9 63 50.8
PGSC0003DMG400017799 Solanum tuberosum HOM05D011975 ORTHO05D001736 7.6e-07 58.9 190 31.6
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 9.9e-07 58.5 54 59.3
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 9.9e-07 58.5 72 51.4
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 9.9e-07 58.5 141 36.2
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 9.9e-07 58.5 95 42.1
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 9.9e-07 58.5 73 46.6
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 9.9e-07 58.5 99 41.4
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 9.9e-07 58.5 99 41.4
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 9.9e-07 58.5 75 45.3
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 9.9e-07 58.5 99 43.4
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 9.9e-07 58.5 136 35.3
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 9.9e-07 58.5 54 59.3
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 9.9e-07 58.5 54 55.6
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 9.9e-07 58.5 81 44.4
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 1.3e-06 58.2 70 48.6
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.3e-06 58.2 185 29.7
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.3e-06 58.2 125 34.4
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.7e-06 57.8 95 42.1
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 1.7e-06 57.8 54 57.4
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.7e-06 57.8 75 48.0
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.7e-06 57.8 71 46.5
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 2.2e-06 57.4 180 30.0
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 2.2e-06 57.4 128 36.7
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.2e-06 57.4 185 29.7
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 2.2e-06 57.4 55 54.5
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 2.2e-06 57.4 150 34.7
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 2.2e-06 57.4 114 38.6
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.2e-06 57.4 99 42.4
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 2.2e-06 57.4 67 46.3
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.2e-06 57.4 143 34.3
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.2e-06 57.4 113 44.2
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.2e-06 57.4 50 62.0
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 2.9e-06 57.0 102 41.2
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.9e-06 57.0 56 53.6
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 2.9e-06 57.0 146 35.6
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 2.9e-06 57.0 74 43.2
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 2.9e-06 57.0 177 31.6
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 2.9e-06 57.0 59 54.2
ATR1101G066 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.8e-06 56.6 44 63.6
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 3.8e-06 56.6 93 47.3
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 3.8e-06 56.6 54 55.6
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.8e-06 56.6 185 29.7
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 3.8e-06 56.6 67 47.8
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 3.8e-06 56.6 95 41.1
THA.LOC104822009 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 3.8e-06 56.6 67 56.7
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 4.9e-06 56.2 80 46.2
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 4.9e-06 56.2 77 41.6
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 4.9e-06 56.2 141 31.9
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 4.9e-06 56.2 143 32.2
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 4.9e-06 56.2 86 45.3
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 6.4e-06 55.8 117 35.0
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 6.4e-06 55.8 135 30.4
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 6.4e-06 55.8 117 35.0
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 6.4e-06 55.8 152 34.9
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.4e-06 55.8 63 49.2
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 6.4e-06 55.8 69 50.7
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 6.4e-06 55.8 151 35.8
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 8.4e-06 55.5 96 39.6
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 8.4e-06 55.5 72 45.8
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 8.4e-06 55.5 76 47.4
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 8.4e-06 55.5 86 40.7
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 8.4e-06 55.5 178 30.9


User provided reference genes

Program Settings