Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.8e-163 579.3 318 100.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.6e-71 272.7 357 56.6
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.3e-62 243.4 320 53.8
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-33 148.3 339 38.9
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.7e-31 139.4 346 38.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 5.2e-30 136.0 356 35.1
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.4e-29 132.9 304 40.5
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 5.7e-29 132.5 338 39.3
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 9.8e-29 131.7 345 36.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.8e-28 130.2 309 40.8
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 2.4e-27 127.1 334 36.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.1e-27 126.3 336 36.0
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.1e-27 126.3 320 39.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.4e-27 125.9 341 36.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 5.4e-27 125.9 318 39.0
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 7.0e-27 125.6 352 34.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-26 124.0 322 38.2
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.0e-25 121.7 361 37.4
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.7e-25 120.9 331 37.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.9e-25 120.2 338 36.7
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.9e-25 120.2 337 37.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.9e-25 120.2 315 36.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 6.6e-25 119.0 346 35.3
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.6e-25 119.0 332 36.7
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.6e-25 119.0 332 36.7
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 8.6e-25 118.6 338 37.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.1e-24 118.2 325 35.1
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.9e-24 117.5 312 34.9
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.5e-24 117.1 328 36.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.3e-24 116.3 312 36.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.6e-24 115.9 318 36.5
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.6e-24 115.9 318 36.5
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.6e-24 115.9 338 33.1
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.5e-24 115.2 355 35.2
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.2e-23 114.8 335 35.8
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.6e-23 114.4 332 35.5
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.6e-23 114.4 311 35.7
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.1e-23 114.0 315 37.1
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.8e-23 113.6 325 34.8
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.8e-23 113.6 340 34.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.6e-23 113.2 349 35.5
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.7e-23 112.8 303 34.7
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 6.1e-23 112.5 347 35.4
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 8.0e-23 112.1 344 34.0
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.4e-22 111.3 314 36.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.4e-22 111.3 256 38.7
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.3e-22 110.5 357 35.0
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 4.0e-22 109.8 341 35.2
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 5.2e-22 109.4 363 34.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.2e-22 109.4 350 32.9
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.8e-22 109.0 356 33.7
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.8e-22 109.0 309 36.2
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 8.9e-22 108.6 247 38.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 8.9e-22 108.6 345 34.2
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.5e-21 107.8 337 32.6
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-21 107.8 303 38.9
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.0e-21 107.5 347 34.0
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.0e-21 107.5 346 37.9
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.6e-21 107.1 351 35.6
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.6e-21 107.1 347 34.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 3.4e-21 106.7 320 35.6
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 9.8e-21 105.1 324 33.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 9.8e-21 105.1 318 33.3
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 3.7e-20 103.2 345 35.7
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 8.3e-20 102.1 358 30.7
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.1e-19 101.7 348 35.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.1e-19 101.7 340 29.4
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.4e-19 101.3 335 34.3
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-19 100.9 323 33.4
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-19 100.9 323 33.4
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 2.4e-19 100.5 325 34.5
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.4e-19 100.5 339 38.3
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.4e-19 100.5 337 35.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.4e-19 100.5 337 35.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.1e-19 99.8 311 36.3
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.0e-19 99.0 335 35.2
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 7.0e-19 99.0 354 31.6
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 9.2e-19 98.6 362 30.4
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.2e-18 98.2 336 33.0
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.6e-18 97.8 348 30.7
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.8e-18 95.5 333 32.4
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.0e-17 95.1 373 31.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-17 94.7 358 33.0
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 6.6e-17 92.4 206 37.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 8.6e-17 92.0 305 34.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.1e-16 91.7 301 34.2
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.5e-16 91.3 350 32.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.9e-16 90.9 316 35.1
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 2.5e-16 90.5 334 33.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.5e-16 90.5 326 33.4
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 5.6e-16 89.4 303 33.3
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 5.6e-16 89.4 314 30.6
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 9.5e-16 88.6 333 31.5
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.2e-15 88.2 338 32.0
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.1e-15 87.4 320 32.2
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.1e-15 87.4 328 30.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.8e-15 87.0 315 35.9
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.6e-15 86.7 336 31.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 8.9e-14 82.0 304 32.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 8.9e-14 82.0 324 35.5
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.2e-13 81.6 303 31.7
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.5e-13 81.3 308 29.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.0e-13 80.9 305 32.1
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.5e-13 79.0 324 29.3
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.5e-13 79.0 324 29.3
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.5e-13 79.0 324 29.3
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.7e-12 77.8 340 29.1
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.7e-12 76.6 378 29.9
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 6.4e-12 75.9 363 29.5
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 8.3e-12 75.5 312 30.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.1e-11 75.1 220 36.4
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.1e-11 75.1 319 31.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 3.2e-11 73.6 320 28.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.1e-11 73.2 315 31.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 5.4e-11 72.8 363 28.9
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 7.0e-11 72.4 312 31.1
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 7.0e-11 72.4 319 28.8
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 9.2e-11 72.0 225 35.1
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.2e-10 71.6 317 29.3
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-10 71.2 323 29.1
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.6e-10 71.2 323 29.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.6e-10 71.2 302 31.1
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.7e-10 70.5 321 29.3
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.7e-10 70.5 321 29.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.7e-10 70.5 321 29.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-09 68.2 303 31.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.7e-09 67.8 114 40.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.9e-09 66.6 219 32.9
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 8.6e-09 65.5 325 28.6
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-08 64.7 307 27.4
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.9e-08 64.3 345 32.2
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.5e-08 63.9 307 28.3
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 5.6e-08 62.8 318 28.3
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 7.3e-08 62.4 318 28.3
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 9.5e-08 62.0 311 28.9
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.4e-06 58.2 321 28.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.1e-06 57.0 311 28.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 4.0e-06 56.6 310 26.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 5.2e-06 56.2 306 27.8


User provided reference genes

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