Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-95 353.2 195 100.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-95 353.2 195 100.0
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.0e-80 302.8 212 77.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.4e-80 302.0 212 77.8
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 4.1e-78 295.0 221 75.1
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 2.7e-77 292.4 208 76.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 3.5e-77 292.0 206 75.2
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.3e-76 289.3 204 77.5
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.1e-75 287.0 211 75.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.1e-75 287.0 206 75.7
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.5e-75 285.8 215 74.4
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.2e-75 285.4 209 75.1
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 3.2e-75 285.4 208 75.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 5.5e-75 284.6 204 75.5
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 5.5e-75 284.6 209 74.2
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 7.2e-75 284.3 209 75.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.2e-74 283.5 207 74.4
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.2e-74 283.5 209 73.7
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.2e-74 283.5 210 73.8
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.6e-74 283.1 206 74.3
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 2.8e-74 282.3 209 74.2
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 3.6e-74 282.0 213 71.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 8.0e-74 280.8 212 75.0
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.4e-73 280.0 212 71.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.4e-73 280.0 213 74.2
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.8e-73 279.6 211 74.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.8e-73 279.6 214 73.8
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.3e-73 279.3 210 72.9
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.3e-73 279.3 206 75.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.3e-73 279.3 211 72.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.0e-73 278.9 218 73.9
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.0e-73 278.9 206 73.8
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 4.0e-73 278.5 214 73.4
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 6.8e-73 277.7 208 72.6
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 8.8e-73 277.3 207 72.9
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.8e-73 277.3 207 72.9
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 8.8e-73 277.3 208 72.1
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.8e-73 277.3 214 73.4
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.2e-72 276.9 213 71.8
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 2.0e-72 276.2 205 72.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.6e-72 275.8 208 72.1
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.6e-72 275.8 207 72.5
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.6e-72 275.8 207 72.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.6e-72 275.8 208 72.6
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.6e-72 275.8 214 70.1
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 3.4e-72 275.4 208 71.6
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.4e-72 275.4 208 71.6
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 3.4e-72 275.4 209 73.7
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.4e-72 275.4 170 82.4
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 5.7e-72 274.6 214 70.6
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.7e-72 274.6 207 72.5
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.7e-72 274.6 211 73.9
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.8e-72 273.9 208 72.1
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 9.8e-72 273.9 214 72.4
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 9.8e-72 273.9 214 70.1
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.3e-71 273.5 208 73.1
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.7e-71 273.1 205 73.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.2e-71 272.7 205 73.2
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.2e-71 272.7 207 72.0
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.2e-71 272.7 213 71.8
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 2.8e-71 272.3 211 71.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.8e-71 272.3 208 72.6
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 3.7e-71 271.9 212 71.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.9e-71 271.6 160 85.0
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.3e-71 271.2 166 83.1
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.3e-71 271.2 204 71.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 8.3e-71 270.8 163 84.0
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.1e-70 270.4 206 70.4
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-70 270.4 207 72.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-70 270.4 212 71.7
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-70 270.4 211 71.1
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.1e-70 270.4 158 85.4
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.1e-70 270.4 213 70.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.4e-70 270.0 206 69.9
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-70 270.0 206 70.9
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.4e-70 270.0 211 72.5
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.8e-70 269.6 216 69.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.4e-70 269.2 215 71.2
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 3.1e-70 268.9 159 84.9
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.1e-70 268.9 210 71.0
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.1e-70 268.5 167 82.0
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 4.1e-70 268.5 160 84.4
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.1e-70 268.5 148 89.2
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 5.4e-70 268.1 160 84.4
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 5.4e-70 268.1 160 84.4
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 5.4e-70 268.1 225 69.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 5.4e-70 268.1 211 71.1
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 7.0e-70 267.7 159 84.3
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 7.0e-70 267.7 159 84.3
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 7.0e-70 267.7 208 69.2
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 9.2e-70 267.3 203 70.0
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 9.2e-70 267.3 144 91.0
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.2e-70 267.3 211 72.5
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.2e-70 267.3 209 73.2
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.2e-69 266.9 149 87.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.2e-69 266.9 211 71.6
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.2e-69 266.9 212 71.2
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.2e-69 266.9 213 69.5
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.6e-69 266.5 208 71.6
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.0e-69 266.2 207 70.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.0e-69 266.2 209 70.8
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 2.0e-69 266.2 210 70.0
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.0e-69 266.2 214 70.6
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.0e-69 266.2 203 72.9
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 3.5e-69 265.4 211 70.1
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 5.9e-69 264.6 208 71.2
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 7.8e-69 264.2 206 69.4
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.3e-68 263.5 207 68.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.7e-68 263.1 204 69.6
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.3e-68 262.7 213 68.1
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 2.3e-68 262.7 213 71.4
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.3e-68 262.7 209 69.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.9e-68 262.3 206 68.9
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.0e-68 261.5 208 69.7
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 5.0e-68 261.5 209 68.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-67 260.4 203 71.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-67 260.4 203 71.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-67 260.4 203 71.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-67 260.4 203 71.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 3.3e-67 258.8 207 68.1
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 4.3e-67 258.5 215 68.4
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.7e-66 255.0 203 68.0
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.4e-65 253.4 205 66.3
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.2e-64 250.4 205 67.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.7e-63 246.5 201 68.7
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.7e-63 245.4 192 70.3
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 8.3e-63 244.2 165 74.5
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 8.3e-63 244.2 202 67.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 2.4e-62 242.7 146 80.1
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.4e-62 241.5 194 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 9.2e-62 240.7 165 73.3
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.6e-61 240.0 210 63.8
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.5e-61 238.8 206 63.6
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.3e-60 236.9 144 84.0
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.7e-60 236.5 165 73.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.9e-60 235.3 209 61.7
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.9e-59 233.0 194 65.5
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.5e-59 232.6 209 66.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 9.5e-59 230.7 200 61.5
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.6e-58 229.9 182 68.7
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.2e-54 215.7 180 67.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 3.9e-52 208.8 130 80.8
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.1e-51 207.2 142 71.8
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.8e-50 202.6 195 57.9
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.3e-49 199.5 214 59.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 3.1e-49 199.1 147 68.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.2e-46 189.1 204 59.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.8e-41 173.3 92 89.1
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.2e-38 162.5 210 51.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.4e-32 142.1 72 94.4
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.7e-28 130.2 206 45.1
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.5e-08 63.9 61 59.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.7e-07 60.5 61 59.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 6.5e-07 58.5 61 57.4
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 7.1e-06 55.1 88 44.3


User provided reference genes

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