Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.5e-148 530.0 392 100.0
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.7e-25 119.8 90 71.1
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.1e-24 117.1 76 81.6
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.2e-24 116.3 76 77.6
Ah.02g126520 Amaranthus hybridus HOM05D028205 ORTHO05D001406 6.9e-24 115.9 62 90.3
Ah.02g126470 Amaranthus hybridus HOM05D028205 ORTHO05D001406 5.6e-18 96.3 58 79.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.6e-17 94.7 74 64.9
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.6e-17 94.7 83 63.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.1e-16 92.0 86 60.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-16 91.7 85 60.0
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-16 91.7 74 64.9
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.4e-16 91.7 84 63.1
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.8e-16 91.3 77 61.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-16 90.9 74 64.9
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.4e-16 90.9 80 60.0
Ah.02g126510 Amaranthus hybridus HOM05D028205 ORTHO05D001406 3.1e-16 90.5 159 46.5
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 3.1e-16 90.5 84 60.7
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 3.1e-16 90.5 78 62.8
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-16 90.5 78 62.8
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 3.1e-16 90.5 78 62.8
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.1e-16 90.5 78 62.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 3.1e-16 90.5 79 59.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.1e-16 90.5 83 59.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.0e-16 90.1 85 58.8
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.0e-16 90.1 83 60.2
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 5.3e-16 89.7 76 60.5
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 5.3e-16 89.7 88 58.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 5.3e-16 89.7 88 58.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 9.0e-16 89.0 85 57.6
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.2e-15 88.6 74 63.5
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.2e-15 88.6 102 53.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-15 88.2 74 62.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.5e-15 88.2 77 59.7
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.5e-15 88.2 78 59.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.5e-15 88.2 73 65.8
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.5e-15 88.2 69 71.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.0e-15 87.8 81 59.3
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.0e-15 87.8 78 61.5
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.0e-15 87.8 98 53.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.6e-15 87.4 79 58.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.4e-15 87.0 92 52.2
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.5e-15 86.7 70 65.7
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.5e-15 86.7 70 65.7
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 5.8e-15 86.3 80 60.0
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 5.8e-15 86.3 80 60.0
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 5.8e-15 86.3 80 60.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 5.8e-15 86.3 100 52.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.8e-15 86.3 77 57.1
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 5.8e-15 86.3 85 54.1
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 9.9e-15 85.5 79 57.0
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-14 85.1 79 55.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.7e-14 84.7 75 64.0
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.7e-14 84.7 73 58.9
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.7e-14 84.7 85 52.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.7e-14 84.7 90 52.2
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-14 84.7 107 48.6
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-14 84.3 74 60.8
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-14 84.3 74 60.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-14 84.3 74 60.8
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.2e-14 84.3 77 58.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.9e-14 84.0 78 59.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.9e-14 84.0 80 57.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.9e-14 84.0 84 60.7
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.9e-14 84.0 81 55.6
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.8e-14 83.6 74 60.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.8e-14 83.6 78 59.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.8e-14 83.6 79 57.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.8e-14 83.6 91 51.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.9e-14 83.2 88 53.4
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.9e-14 83.2 88 53.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 6.4e-14 82.8 78 59.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.4e-14 82.8 77 61.0
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 8.4e-14 82.4 75 58.7
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-13 82.0 72 65.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.1e-13 82.0 71 62.0
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.4e-13 81.6 71 60.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.4e-13 81.6 79 55.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.9e-13 81.3 83 55.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.4e-13 80.9 89 50.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.4e-13 80.9 73 64.4
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 3.2e-13 80.5 86 54.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.2e-13 80.1 71 57.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 4.2e-13 80.1 85 52.9
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 4.2e-13 80.1 71 60.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.4e-13 79.7 74 58.1
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 5.4e-13 79.7 84 53.6
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 7.1e-13 79.3 89 51.7
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 7.1e-13 79.3 73 60.3
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 9.3e-13 79.0 72 58.3
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 9.3e-13 79.0 86 50.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 9.3e-13 79.0 68 58.8
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.6e-12 78.2 72 58.3
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.6e-12 78.2 93 51.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.6e-12 78.2 72 58.3
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.1e-12 77.8 76 53.9
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.1e-12 77.8 68 57.4
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.5e-12 77.0 98 50.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 4.6e-12 76.6 95 48.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 4.6e-12 76.6 93 46.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 6.0e-12 76.3 73 57.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 6.0e-12 76.3 76 57.9
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.0e-12 76.3 68 55.9
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.0e-11 75.5 71 54.9
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.0e-11 75.5 72 56.9
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.0e-11 75.5 85 55.3
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.0e-11 75.5 68 61.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.8e-11 74.7 96 51.0
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.8e-11 74.7 84 52.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.3e-11 74.3 87 52.9
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.0e-11 73.9 89 52.8
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.0e-11 73.9 73 60.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.0e-11 73.9 86 53.5
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.1e-11 73.2 67 61.2
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-10 72.0 80 52.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.1e-10 72.0 80 52.5
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.1e-10 72.0 82 52.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.5e-10 71.6 85 48.2
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.5e-10 71.6 74 55.4
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.5e-10 71.6 75 56.0
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.5e-10 70.9 74 56.8
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-10 70.9 75 52.0
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.3e-10 70.5 73 53.4
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.3e-10 70.1 80 53.8
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 4.3e-10 70.1 73 58.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 5.6e-10 69.7 84 51.2
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 9.6e-10 68.9 71 56.3
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.3e-09 68.6 74 52.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.3e-09 68.6 73 52.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-09 68.6 72 51.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-09 68.6 82 52.4
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.1e-09 67.8 75 52.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 3.7e-09 67.0 82 45.1
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 3.7e-09 67.0 97 44.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 4.8e-09 66.6 74 54.1
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 6.2e-09 66.2 71 54.9
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 6.2e-09 66.2 78 52.6
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.1e-08 65.5 83 45.8
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.4e-08 65.1 87 49.4
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-08 65.1 81 49.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-08 65.1 81 49.4
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.4e-08 65.1 73 56.2
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.8e-08 64.7 73 49.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.4e-08 64.3 77 49.4
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.4e-08 64.3 77 49.4
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.1e-08 63.9 77 49.4
Sc04g0007690 Simmondsia chinensis HOM05D001658 ORTHO05D001406 3.1e-08 63.9 35 77.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 5.3e-08 63.2 85 47.1
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 5.3e-08 63.2 68 52.9
AUR62003130 Chenopodium quinoa HOM05D049765 ORTHO05D004171 9.0e-08 62.4 46 65.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-07 62.0 81 46.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.5e-07 61.6 78 51.3
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.5e-07 61.6 75 49.3
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.0e-07 61.2 81 45.7
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.0e-07 61.2 77 49.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.6e-07 60.8 77 46.8
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.6e-07 60.8 83 44.6
AUR62007937 Chenopodium quinoa HOM05D001658 ORTHO05D001406 3.4e-07 60.5 35 71.4
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.4e-07 60.5 73 46.6
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.5e-07 60.1 90 46.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 4.5e-07 60.1 77 49.4
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.5e-07 60.1 83 48.2
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.6e-07 59.3 84 46.4
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 9.9e-07 58.9 68 51.5
Ah.03g139060 Amaranthus hybridus HOM05D001658 ORTHO05D001406 1.3e-06 58.5 34 70.6
EL10Ac6g14971 Beta vulgaris HOM05D001658 ORTHO05D001406 1.3e-06 58.5 31 74.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.3e-06 58.5 90 45.6
PGSC0003DMG400007715 Solanum tuberosum HOM05D001658 ORTHO05D001406 1.3e-06 58.5 39 64.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-06 58.2 78 47.4
Nitab4.5_0002052g0060 Nicotiana tabacum HOM05D001658 ORTHO05D001406 1.7e-06 58.2 30 76.7
Nitab4.5_0002594g0090 Nicotiana tabacum HOM05D001658 ORTHO05D001406 1.7e-06 58.2 30 76.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.7e-06 58.2 67 47.8
Sc11g0002360 Simmondsia chinensis HOM05D001658 ORTHO05D001406 1.7e-06 58.2 35 71.4
Sopen01g006020 Solanum pennellii HOM05D001658 ORTHO05D001406 1.7e-06 58.2 53 52.8
AUR62007950 Chenopodium quinoa HOM05D049765 ORTHO05D004171 2.9e-06 57.4 84 45.2
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 2.9e-06 57.4 96 40.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.9e-06 57.4 73 50.7
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.9e-06 57.4 68 51.5
Ah.02g126480 Amaranthus hybridus HOM05D001658 ORTHO05D001406 3.8e-06 57.0 35 68.6
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.8e-06 57.0 75 45.3
CAN.G827.1 Capsicum annuum HOM05D001658 ORTHO05D001406 4.9e-06 56.6 45 57.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.9e-06 56.6 76 46.1
Solyc01g010410.3 Solanum lycopersicum HOM05D001658 ORTHO05D001406 6.4e-06 56.2 45 55.6


User provided reference genes

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