Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 4.9e-186 654.4 356 100.0
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 3.2e-97 359.4 345 62.3
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 4.2e-97 359.0 345 62.0
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 3.1e-63 246.5 350 48.0
Hund05863 Selenicereus undatus HOM05D002953 ORTHO05D003249 7.9e-27 125.6 410 31.0
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 1.4e-20 104.8 339 31.3
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.2e-20 103.6 389 30.8
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 6.0e-19 99.4 337 30.3
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 7.9e-19 99.0 375 31.5
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 1.8e-18 97.8 338 31.4
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 2.3e-18 97.4 343 30.9
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 5.1e-18 96.3 363 30.9
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.1e-17 95.1 151 42.4
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.1e-17 95.1 151 42.4
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.5e-17 94.7 151 42.4
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.5e-17 94.7 354 29.7
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 3.3e-17 93.6 340 27.9
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 4.3e-17 93.2 325 31.7
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 5.6e-17 92.8 360 30.3
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 5.6e-17 92.8 258 34.9
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 9.6e-17 92.0 372 27.7
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 9.6e-17 92.0 389 29.0
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 1.3e-16 91.7 345 30.7
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.3e-16 91.7 277 32.9
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 1.6e-16 91.3 361 31.0
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 1.6e-16 91.3 361 31.0
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 1.6e-16 91.3 358 29.1
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.6e-16 91.3 177 37.9
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 2.1e-16 90.9 253 32.4
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 2.8e-16 90.5 340 29.7
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 2.8e-16 90.5 327 30.3
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 6.2e-16 89.4 229 33.2
Hund25195 Selenicereus undatus HOM05D002953 ORTHO05D003249 6.2e-16 89.4 264 34.1
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 8.1e-16 89.0 318 29.2
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.1e-15 88.6 222 34.2
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 1.8e-15 87.8 357 28.6
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 3.1e-15 87.0 366 28.4
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 6.9e-15 85.9 333 30.6
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 9.0e-15 85.5 357 28.3
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.0e-15 85.5 338 28.4
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 1.2e-14 85.1 340 29.7
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 2.0e-14 84.3 224 32.6
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 2.6e-14 84.0 355 28.2
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 2.6e-14 84.0 188 37.2
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 2.6e-14 84.0 369 29.3
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.8e-14 82.8 141 40.4
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 5.8e-14 82.8 370 28.6
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 5.8e-14 82.8 216 32.9
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 7.6e-14 82.4 141 38.3
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 7.6e-14 82.4 146 41.1
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 1.3e-13 81.6 348 29.3
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.3e-13 81.6 335 26.0
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 1.7e-13 81.3 139 41.7
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 2.2e-13 80.9 353 26.9
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 2.2e-13 80.9 219 31.5
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.9e-13 80.5 365 28.5
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 2.9e-13 80.5 366 26.2
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 4.9e-13 79.7 283 30.7
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 1.1e-12 78.6 141 36.9
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 1.4e-12 78.2 327 26.6
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 2.5e-12 77.4 137 39.4
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 4.2e-12 76.6 251 31.1
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 7.1e-12 75.9 254 33.1
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 7.1e-12 75.9 337 27.6
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 9.3e-12 75.5 140 37.1
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 9.3e-12 75.5 331 27.8
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 1.2e-11 75.1 137 36.5
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 2.1e-11 74.3 137 33.6
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 2.7e-11 73.9 246 30.5
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 2.7e-11 73.9 135 33.3
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.5e-11 73.6 356 28.7
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 4.6e-11 73.2 324 24.7
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 4.6e-11 73.2 336 26.5
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 7.9e-11 72.4 351 28.2
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 7.9e-11 72.4 239 31.0
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.0e-10 72.0 368 28.3
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 1.3e-10 71.6 370 28.1
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 1.3e-10 71.6 251 31.1
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 1.8e-10 71.2 142 36.6
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 2.3e-10 70.9 157 33.8
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 3.0e-10 70.5 137 35.8
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 3.9e-10 70.1 140 37.9
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.9e-10 70.1 153 34.0
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 3.9e-10 70.1 153 34.0
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 3.9e-10 70.1 144 31.9
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 3.9e-10 70.1 213 31.9
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.1e-10 69.7 153 34.0
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 5.1e-10 69.7 154 34.4
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 5.1e-10 69.7 141 31.9
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 5.1e-10 69.7 162 34.0
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 5.1e-10 69.7 260 28.8
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 6.7e-10 69.3 364 28.0
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 6.7e-10 69.3 332 25.3
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 8.7e-10 68.9 158 34.8
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 8.7e-10 68.9 332 28.0
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 1.1e-09 68.6 136 35.3
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.1e-09 68.6 246 31.3
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 1.5e-09 68.2 226 31.0
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.5e-09 68.2 148 32.4
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.9e-09 67.8 320 25.9
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 1.9e-09 67.8 202 30.2
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 2.5e-09 67.4 265 29.4
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 3.3e-09 67.0 140 32.1
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 3.3e-09 67.0 349 26.6
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 3.3e-09 67.0 349 26.6
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 3.3e-09 67.0 262 30.5
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 4.3e-09 66.6 148 35.1
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 7.4e-09 65.9 141 35.5
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 7.4e-09 65.9 141 35.5
Migut.E00059 Erythranthe guttata HOM05D002953 ORTHO05D003249 7.4e-09 65.9 361 26.0
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 7.4e-09 65.9 332 26.2
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 9.6e-09 65.5 236 29.7
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 9.6e-09 65.5 247 26.7
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.6e-08 64.7 281 28.5
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.6e-08 64.7 142 31.0
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 2.1e-08 64.3 126 34.9
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.8e-08 63.9 127 37.0
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.8e-08 63.9 141 31.2
MELO3C012137.2 Cucumis melo HOM05D002953 ORTHO05D003249 2.8e-08 63.9 331 27.8
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 3.7e-08 63.5 127 36.2
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 3.7e-08 63.5 133 33.8
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 4.8e-08 63.2 135 31.9
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 4.8e-08 63.2 243 28.8
Thhalv10019347m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 4.8e-08 63.2 136 36.8
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 4.8e-08 63.2 115 39.1
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 6.3e-08 62.8 245 29.0
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 8.2e-08 62.4 335 23.6
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.1e-07 62.0 140 32.1
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.1e-07 62.0 237 30.4
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 1.4e-07 61.6 136 28.7
Aa31LG4G11550 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.8e-07 61.2 130 36.2
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 1.8e-07 61.2 132 34.1
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.8e-07 61.2 204 29.9
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 3.1e-07 60.5 140 32.9
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 3.1e-07 60.5 366 23.8
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 3.1e-07 60.5 152 33.6
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 4.1e-07 60.1 266 25.6
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 4.1e-07 60.1 253 30.4
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 5.3e-07 59.7 335 24.5
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 5.3e-07 59.7 127 35.4
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 5.3e-07 59.7 150 33.3
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 6.9e-07 59.3 358 25.1
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 9.0e-07 58.9 190 29.5
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 1.5e-06 58.2 358 26.0
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 1.5e-06 58.2 134 32.8
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 1.5e-06 58.2 145 29.7
CsaV3_5G033170 Cucumis sativus L. HOM05D000954 ORTHO05D000822 2.0e-06 57.8 329 26.4
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 2.6e-06 57.4 222 28.4
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 2.6e-06 57.4 188 28.7
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 2.6e-06 57.4 63 47.6
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 3.4e-06 57.0 167 30.5
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 3.4e-06 57.0 219 29.7
arahy.Tifrunner.gnm1.ann1.GA8N54 Arachis hypogaea HOM05D002953 ORTHO05D003249 4.5e-06 56.6 140 31.4
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 4.5e-06 56.6 122 33.6
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 4.5e-06 56.6 238 29.0
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 4.5e-06 56.6 162 29.6
BcaC03g15073 Brassica carinata HOM05D002953 ORTHO05D003249 5.9e-06 56.2 136 33.1
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 5.9e-06 56.2 166 30.7
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 5.9e-06 56.2 275 26.2
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 7.6e-06 55.8 138 28.3
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 7.6e-06 55.8 149 30.9
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 7.6e-06 55.8 143 30.1
Oeu048151.2 Olea europaea HOM05D002953 ORTHO05D003249 7.6e-06 55.8 58 51.7
Migut.L01214 Erythranthe guttata HOM05D002953 ORTHO05D003249 1.0e-05 55.5 360 25.3
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 1.0e-05 55.5 208 26.4


User provided reference genes

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