Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 0.0e+00 1174.8 657 100.0
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 2.2e-248 862.4 645 77.1
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 6.4e-216 754.6 644 69.9
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 7.6e-193 677.9 652 63.0
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 4.5e-169 599.0 641 49.6
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 2.5e-164 583.2 656 47.3
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 4.3e-164 582.4 533 54.4
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.3e-163 580.9 656 47.1
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 1.0e-160 571.2 651 47.5
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 6.5e-160 568.5 646 46.7
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 3.2e-159 566.2 658 46.2
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 5.5e-159 565.5 651 53.1
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 7.2e-159 565.1 654 46.5
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 1.2e-158 564.3 632 55.1
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 1.6e-158 563.9 647 45.9
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 2.7e-158 563.1 645 46.5
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 6.1e-158 562.0 639 46.5
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 3.9e-157 559.3 639 53.8
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 6.7e-157 558.5 645 46.5
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 8.7e-157 558.1 641 45.4
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 8.7e-157 558.1 651 45.0
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 3.3e-156 556.2 637 46.5
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 5.7e-156 555.4 617 46.5
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 4.8e-155 552.4 639 53.4
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 6.9e-154 548.5 633 49.6
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 1.5e-153 547.4 651 44.5
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 2.6e-153 546.6 554 51.1
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.4e-151 540.8 636 45.1
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 1.4e-151 540.8 615 46.2
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 4.2e-151 539.3 636 45.0
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 7.2e-151 538.5 634 45.1
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 4.7e-150 535.8 625 51.5
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 4.7e-150 535.8 654 50.9
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 4.7e-150 535.8 639 52.3
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 4.7e-150 535.8 647 46.2
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 1.1e-148 531.2 640 52.3
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 2.6e-148 530.0 655 44.3
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 3.3e-148 529.6 639 44.1
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 2.2e-147 526.9 639 44.4
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 3.7e-147 526.2 637 44.0
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.2e-145 521.2 648 50.8
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 2.0e-145 520.4 643 42.9
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 1.7e-144 517.3 540 49.1
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 2.2e-144 516.9 646 43.3
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 5.0e-144 515.8 635 51.0
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 6.5e-144 515.4 652 43.6
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 1.4e-143 514.2 642 43.8
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 1.9e-143 513.8 637 44.3
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 1.9e-143 513.8 623 44.6
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 1.6e-142 510.8 650 43.2
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 3.9e-141 506.1 651 49.9
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 5.2e-141 505.8 638 49.8
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 5.7e-140 502.3 540 48.0
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 1.7e-139 500.7 535 49.0
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 2.8e-139 500.0 651 42.9
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 2.4e-138 496.9 646 42.0
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 1.2e-137 494.6 648 43.4
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 2.0e-137 493.8 639 50.5
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 2.6e-137 493.4 647 43.4
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 1.7e-136 490.7 533 48.0
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.1e-135 488.0 644 42.9
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 1.5e-135 487.6 634 46.8
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 4.2e-135 486.1 642 43.0
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 4.2e-135 486.1 655 43.1
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 3.6e-134 483.0 651 41.9
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 8.0e-134 481.9 648 42.4
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 5.2e-133 479.2 648 41.0
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 5.7e-132 475.7 518 47.7
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 8.2e-131 471.9 631 45.2
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 3.8e-128 463.0 650 47.7
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 9.8e-124 448.4 632 40.2
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 1.7e-123 447.6 641 40.9
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 4.8e-123 446.0 626 46.8
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 6.3e-123 445.7 652 45.9
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 4.7e-118 429.5 498 46.2
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 1.7e-115 421.0 643 38.6
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 2.8e-115 420.2 528 43.6
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 6.3e-115 419.1 504 43.1
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.1e-114 418.3 650 38.9
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 2.4e-114 417.2 625 37.4
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 1.0e-112 411.8 646 38.2
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 2.9e-112 410.2 500 41.8
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 3.8e-112 409.8 635 44.6
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 2.5e-111 407.1 509 41.8
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 5.6e-111 406.0 538 41.8
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 2.8e-110 403.7 460 46.1
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 7.8e-105 385.6 627 36.4
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 4.7e-102 376.3 622 44.1
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 1.3e-99 368.2 532 38.9
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 1.3e-99 368.2 532 38.9
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 2.3e-96 357.5 641 34.5
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 7.1e-90 335.9 366 47.0
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 4.7e-86 323.2 696 31.2
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.4e-77 295.0 669 31.4
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 5.2e-77 293.1 629 32.1
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 5.8e-76 289.7 666 30.0
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.5e-73 280.4 645 34.4
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 4.2e-66 256.9 613 30.3
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 6.5e-51 206.5 258 45.3
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 1.6e-49 201.8 526 27.8
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 2.3e-40 171.4 194 48.5
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 3.9e-40 170.6 185 46.5
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 5.3e-37 160.2 236 39.8
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 8.8e-32 142.9 218 61.0
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 8.2e-22 109.8 136 46.3
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 1.5e-15 89.0 79 55.7
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 2.6e-15 88.2 150 34.7
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 2.8e-14 84.7 171 28.7
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 1.6e-09 68.9 396 21.2
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 4.7e-09 67.4 164 32.3
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.0e-08 64.3 404 21.0
GSVIVG01027442001 Vitis vinifera HOM05D002391 ORTHO05D003966 8.8e-08 63.2 156 28.8
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 1.2e-07 62.8 318 24.2
Dinv43534 Davidia involucrata HOM05D000001 ORTHO05D000003 1.5e-07 62.4 541 20.3
AUR62006046 Chenopodium quinoa HOM05D000001 ORTHO05D010669 2.0e-07 62.0 116 26.7
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 2.6e-07 61.6 156 26.9
Potri.014G105900 Populus trichocarpa HOM05D002391 ORTHO05D003966 2.6e-07 61.6 156 26.3
QL09p007752 Quercus lobata HOM05D000001 ORTHO05D010669 2.6e-07 61.6 114 28.9
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 3.4e-07 61.2 153 25.5
AUR62035582 Chenopodium quinoa HOM05D000001 ORTHO05D010669 4.4e-07 60.8 116 26.7
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 4.4e-07 60.8 161 25.5
PGR142G2363 Punica granatum HOM05D000001 ORTHO05D010669 5.7e-07 60.5 157 26.1
AagrBONN_evm.TU.Sc2ySwM_369.575 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.5e-07 60.1 193 24.4
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 7.5e-07 60.1 287 24.0
MELO3C007835.2 Cucumis melo HOM05D000001 ORTHO05D000003 7.5e-07 60.1 138 28.3
CiPaw.09G071900 Carya illinoinensis HOM05D000001 ORTHO05D000003 9.8e-07 59.7 347 24.8
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 9.8e-07 59.7 134 28.4
PSO063G3400 Papaver somniferum HOM05D002391 ORTHO05D003966 1.3e-06 59.3 181 24.9
arahy.Tifrunner.gnm1.ann1.LY1D8B Arachis hypogaea HOM05D002391 ORTHO05D003966 1.7e-06 58.9 161 26.7
Medtr7g118240 Medicago truncatula HOM05D002391 ORTHO05D003966 1.7e-06 58.9 162 27.8
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 2.2e-06 58.5 174 24.1
arahy.Tifrunner.gnm1.ann1.X7MPPU Arachis hypogaea HOM05D002391 ORTHO05D003966 2.2e-06 58.5 157 26.8
Duzib138G0669 Durio zibethinus HOM05D002391 ORTHO05D003966 2.2e-06 58.5 159 26.4
Gohir.D12G120300 Gossypium hirsutum HOM05D002391 ORTHO05D003966 2.2e-06 58.5 159 27.7
Sed0013687 Sechium edule HOM05D000001 ORTHO05D000003 2.2e-06 58.5 171 26.3
TPR.G37535 Trifolium pratense HOM05D002460 ORTHO05D002716 2.2e-06 58.5 198 23.7
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.8e-06 58.2 287 24.0
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.8e-06 58.2 287 24.0
Gorai.012G187700 Gossypium raimondii HOM05D006556 ORTHO05D008146 2.8e-06 58.2 230 25.7
Lsat_1_v5_gn_8_78700 Lactuca sativa HOM05D002453 ORTHO05D002107 2.8e-06 58.2 138 28.3
TPR.G4775 Trifolium pratense HOM05D002391 ORTHO05D003966 2.8e-06 58.2 161 26.7
arahy.Tifrunner.gnm1.ann1.0D88S7 Arachis hypogaea HOM05D002391 ORTHO05D003966 3.7e-06 57.8 160 26.2
arahy.Tifrunner.gnm1.ann1.RPDR7L Arachis hypogaea HOM05D002391 ORTHO05D003966 3.7e-06 57.8 164 25.6
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 3.7e-06 57.8 387 22.5
Ciclev10023955m.g Citrus clementina HOM05D002391 ORTHO05D003966 3.7e-06 57.8 161 26.1
Prupe.7G213300 Prunus persica HOM05D000001 ORTHO05D000003 3.7e-06 57.8 129 27.9
Rhsim08G0048600 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.7e-06 57.8 137 28.5
GSVIVG01015233001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.7e-06 57.8 199 26.6
Gohir.D04G192300 Gossypium hirsutum HOM05D006556 ORTHO05D008146 4.8e-06 57.4 230 25.7
Lj2C99T13 Lonicera japonica HOM05D006895 ORTHO05D008605 4.8e-06 57.4 154 28.6
Manes.01G239601 Manihot esculenta HOM05D002391 ORTHO05D003966 4.8e-06 57.4 159 25.8
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 4.8e-06 57.4 342 22.5
arahy.Tifrunner.gnm1.ann1.M8XQ0K Arachis hypogaea HOM05D002391 ORTHO05D003966 6.3e-06 57.0 159 27.0
AUR62007221 Chenopodium quinoa HOM05D000001 ORTHO05D010065 6.3e-06 57.0 127 27.6
Haze_25886 Corylus avellana HOM05D000001 ORTHO05D000003 6.3e-06 57.0 200 27.5
Manes.06G110600 Manihot esculenta HOM05D002460 ORTHO05D002716 6.3e-06 57.0 309 20.4
Thecc.09G195200 Theobroma cacao HOM05D000001 ORTHO05D000003 6.3e-06 57.0 177 25.4
Ah.07g199970 Amaranthus hybridus HOM05D000001 ORTHO05D010065 8.3e-06 56.6 127 27.6
arahy.Tifrunner.gnm1.ann1.U08DU4 Arachis hypogaea HOM05D002460 ORTHO05D002716 8.3e-06 56.6 202 23.3
A01p37710 Brassica napus HOM05D000001 ORTHO05D000003 8.3e-06 56.6 170 28.2
COL.COLO4_23049 Corchorus olitorius HOM05D002391 ORTHO05D003966 8.3e-06 56.6 159 26.4
Eucgr.H00915 Eucalyptus grandis HOM05D000001 ORTHO05D010033 8.3e-06 56.6 126 27.0
Eucgr.L01374 Eucalyptus grandis HOM05D002391 ORTHO05D003966 8.3e-06 56.6 157 25.5
Sabra14G0078000 Salix brachista HOM05D002391 ORTHO05D003966 8.3e-06 56.6 156 25.0


User provided reference genes

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