Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.3e-215 753.1 447 100.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.4e-137 493.8 483 65.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.4e-129 467.2 457 62.1
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 9.9e-128 461.1 543 54.7
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.9e-127 458.8 464 63.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.1e-122 443.4 453 63.6
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.9e-107 393.7 474 56.1
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 6.2e-106 388.7 470 57.9
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.9e-103 379.8 460 51.3
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 6.5e-103 378.6 418 52.9
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.4e-102 377.5 445 52.6
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.9e-102 377.1 476 54.2
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.5e-102 376.7 476 51.9
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 4.6e-101 372.5 426 51.9
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.1e-101 372.1 466 49.8
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.1e-101 372.1 475 52.2
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.0e-100 371.3 468 55.1
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.0e-100 371.3 466 49.8
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.1e-100 369.0 446 51.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.5e-99 367.5 469 55.9
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.6e-98 364.0 444 55.4
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 3.7e-98 362.8 469 50.3
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.8e-98 362.5 460 50.9
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 6.3e-98 362.1 432 52.3
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.2e-98 361.7 455 51.6
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.4e-97 360.1 478 52.7
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.1e-97 359.8 472 54.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.1e-97 359.4 460 50.7
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 6.9e-97 358.6 469 53.3
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.9e-96 355.5 409 56.2
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.3e-95 354.4 475 53.1
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.8e-95 352.8 467 50.7
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 6.5e-95 352.1 449 54.8
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.5e-95 352.1 470 50.2
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 2.5e-94 350.1 471 52.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 7.2e-94 348.6 446 50.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 9.4e-94 348.2 471 50.5
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.7e-93 346.7 485 49.9
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.7e-93 346.7 461 53.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.7e-93 346.7 464 50.4
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.6e-93 345.9 461 52.9
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.6e-93 345.9 470 48.7
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.0e-92 344.7 477 50.3
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.4e-92 344.4 464 47.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.3e-92 343.6 448 51.8
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.0e-92 343.2 445 48.8
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.0e-91 340.5 457 54.7
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 5.7e-91 339.0 504 49.0
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.4e-91 338.6 426 52.6
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.2e-90 337.0 455 50.3
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.8e-90 336.7 474 53.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 3.7e-90 336.3 477 51.8
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.7e-90 336.3 468 52.6
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.3e-90 335.5 468 48.3
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 8.2e-90 335.1 478 53.3
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.1e-89 334.7 469 53.7
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.4e-89 334.3 478 46.9
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.8e-89 334.0 474 47.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-89 334.0 469 53.9
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.4e-89 333.6 474 44.9
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.4e-89 333.6 464 51.3
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-89 333.2 468 52.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.2e-88 331.3 466 51.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.2e-88 331.3 475 51.8
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.2e-88 331.3 469 51.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.2e-88 331.3 445 51.2
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.2e-88 331.3 479 50.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.2e-88 331.3 541 43.8
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.5e-88 330.9 376 57.2
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 4.5e-88 329.3 475 46.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 5.9e-88 328.9 465 53.1
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 8.5e-87 325.1 478 51.7
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.4e-86 324.3 485 43.7
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 3.2e-86 323.2 419 54.9
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 9.4e-86 321.6 436 48.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.2e-85 321.2 473 46.5
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.2e-85 321.2 471 50.1
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 6.1e-85 318.9 406 49.8
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.9e-85 318.5 470 46.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.0e-84 318.2 446 46.0
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.0e-84 318.2 463 51.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.8e-84 317.4 473 49.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.0e-84 316.6 473 46.3
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.1e-83 314.7 445 48.8
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.6e-83 313.5 445 48.3
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 7.4e-83 312.0 480 48.8
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 9.7e-83 311.6 465 48.8
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.3e-82 311.2 472 51.7
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 5.3e-81 305.8 447 45.2
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.5e-80 304.3 471 46.3
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.0e-80 303.9 493 44.6
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 7.7e-80 302.0 449 51.2
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 7.7e-80 302.0 484 44.0
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.7e-79 300.8 421 50.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 2.9e-79 300.1 450 51.8
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 3.8e-79 299.7 421 53.4
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 8.5e-79 298.5 438 49.5
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-78 298.1 492 48.2
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.5e-78 297.7 445 51.5
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.2e-78 296.2 490 46.3
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.6e-77 293.1 334 62.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.7e-77 292.7 508 46.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.1e-77 292.4 544 41.2
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-76 290.8 477 49.5
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.8e-76 290.8 439 47.6
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 8.8e-76 288.5 427 49.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.1e-73 281.6 460 46.3
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.1e-73 279.6 469 44.6
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 5.0e-71 272.7 459 44.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 8.5e-71 271.9 389 52.2
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.5e-70 270.4 352 50.9
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.0e-69 265.4 469 45.0
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-67 261.2 430 48.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 8.3e-66 255.4 329 56.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.4e-65 253.8 440 43.0
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.0e-64 250.8 246 61.8
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.8e-63 246.5 450 39.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 5.5e-62 242.7 457 36.8
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 8.8e-60 235.3 252 55.2
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.7e-58 229.9 419 39.9
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.7e-56 223.8 260 51.5
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 7.7e-56 222.2 431 42.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.1e-54 218.4 393 43.5
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.3e-52 210.7 423 38.3
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 6.3e-50 202.6 272 49.6
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 6.6e-47 192.6 390 40.5
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.0e-44 185.3 278 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.2e-42 177.6 416 32.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.3e-38 163.3 251 44.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.8e-35 152.9 443 30.9
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 2.7e-32 144.1 396 34.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 1.7e-23 114.8 162 45.1
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.5e-22 111.7 94 60.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.6e-21 107.1 67 76.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.1e-20 105.5 73 71.2
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.2e-20 103.2 288 29.5
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 6.8e-20 102.8 426 34.3
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.5e-19 101.7 93 57.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.4e-18 95.9 182 39.0
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.1e-17 92.8 146 39.7
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.5e-16 90.5 174 39.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.7e-15 88.2 221 37.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 8.1e-13 79.3 260 27.3
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.4e-12 78.6 167 35.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.8e-12 78.2 380 30.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 9.9e-11 72.4 110 40.9
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-10 71.6 116 43.1
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 2.2e-10 71.2 182 34.6
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 8.4e-10 69.3 170 32.9
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.1e-09 68.9 102 43.1
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.4e-09 68.6 71 46.5
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.9e-08 62.8 52 57.7
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 3.9e-07 60.5 152 48.7
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.5e-06 58.5 150 34.7


User provided reference genes

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