Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g125980 Amaranthus hybridus HOM05D006120 ORTHO05D007913 3.3e-231 804.7 398 100.0
AUR62003308 Chenopodium quinoa HOM05D006120 ORTHO05D007913 8.7e-160 567.4 576 55.0
EL10Ac6g14753 Beta vulgaris HOM05D006120 ORTHO05D007913 1.1e-146 523.9 577 51.8
Potri.007G081400 Populus trichocarpa HOM05D006120 ORTHO05D007913 3.3e-143 512.3 578 50.5
Actinidia05860 Actinidia chinensis HOM05D006120 ORTHO05D007913 1.0e-139 500.7 585 48.7
CiPaw.04G092000 Carya illinoinensis HOM05D006120 ORTHO05D007913 1.0e-139 500.7 577 49.7
GSVIVG01022223001 Vitis vinifera HOM05D006120 ORTHO05D007913 1.0e-139 500.7 587 48.6
Hund19657 Selenicereus undatus HOM05D006120 ORTHO05D007913 3.8e-139 498.8 580 49.0
Ciclev10025236m.g Citrus clementina HOM05D006120 ORTHO05D007913 8.5e-139 497.7 587 48.2
Sopen04g023470 Solanum pennellii HOM05D006120 ORTHO05D007913 1.1e-138 497.3 521 50.9
Manes.12G142500 Manihot esculenta HOM05D006120 ORTHO05D007913 2.5e-138 496.1 565 48.7
MD15G1333300 Malus domestica HOM05D006120 ORTHO05D007913 4.2e-138 495.4 595 47.2
Solyc04g053120.3 Solanum lycopersicum HOM05D006120 ORTHO05D007913 4.2e-138 495.4 521 50.7
Prupe.6G173200 Prunus persica HOM05D006120 ORTHO05D007913 9.4e-138 494.2 591 47.0
QL06p032201 Quercus lobata HOM05D006120 ORTHO05D007913 1.6e-137 493.4 587 48.7
ClCG02G013390 Citrullus lanatus HOM05D006120 ORTHO05D007913 4.7e-137 491.9 559 49.4
Haze_25037 Corylus avellana HOM05D006120 ORTHO05D007913 1.8e-136 490.0 583 48.4
Peaxi162Scf00323g00517 Petunia axillaris HOM05D006120 ORTHO05D007913 6.7e-136 488.0 578 47.4
CAN.G276.3 Capsicum annuum HOM05D006120 ORTHO05D007913 1.1e-135 487.3 571 48.2
Nn1g05190 Nelumbo nucifera HOM05D006120 ORTHO05D007913 1.5e-135 486.9 593 46.4
Atru.chr4.351 Acer truncatum HOM05D006120 ORTHO05D007913 2.0e-135 486.5 586 47.1
arahy.Tifrunner.gnm1.ann1.Y3LRN9 Arachis hypogaea HOM05D006120 ORTHO05D007913 2.0e-135 486.5 577 47.1
TPR.G23750 Trifolium pratense HOM05D006120 ORTHO05D007913 2.0e-135 486.5 546 49.1
arahy.Tifrunner.gnm1.ann1.UD5YJS Arachis hypogaea HOM05D006120 ORTHO05D007913 2.6e-135 486.1 577 47.1
Sabra07G0068400 Salix brachista HOM05D006120 ORTHO05D007913 4.4e-135 485.3 592 46.6
PGSC0003DMG400016589 Solanum tuberosum HOM05D006120 ORTHO05D007913 5.7e-135 485.0 541 48.8
arahy.Tifrunner.gnm1.ann1.AFE07A Arachis hypogaea HOM05D006120 ORTHO05D007913 1.7e-134 483.4 577 47.0
Lsat_1_v5_gn_2_67361 Lactuca sativa HOM05D006120 ORTHO05D007913 2.8e-134 482.6 574 48.3
Sed0002401 Sechium edule HOM05D006120 ORTHO05D007913 4.8e-134 481.9 570 48.1
Ca_16892_v3 Cicer arietinum L. HOM05D006120 ORTHO05D007913 1.1e-133 480.7 556 48.4
CsaV3_2G017550 Cucumis sativus L. HOM05D006120 ORTHO05D007913 1.1e-133 480.7 523 48.9
TWI53G1580 Tripterygium wilfordii HOM05D006120 ORTHO05D007913 1.4e-133 480.3 579 46.1
FvH4_1g22230 Fragaria vesca HOM05D006120 ORTHO05D007913 2.4e-133 479.6 582 46.9
HanXRQChr15g0484401 Helianthus annuus HOM05D006120 ORTHO05D007913 2.4e-133 479.6 582 45.9
CANSAT01G3221 Cannabis sativa HOM05D006120 ORTHO05D007913 3.1e-133 479.2 562 47.2
Aqoxy6G00482 Aquilegia oxysepala HOM05D006120 ORTHO05D007913 2.6e-132 476.1 533 48.2
ECA238G0742 Erigeron canadensis HOM05D006120 ORTHO05D007913 3.5e-132 475.7 576 47.6
Migut.L00074 Erythranthe guttata HOM05D006120 ORTHO05D007913 4.5e-132 475.3 570 46.0
Lj4C877G13 Lonicera japonica HOM05D006120 ORTHO05D007913 4.5e-132 475.3 521 47.8
TAR628G0801 Trochodendron aralioides HOM05D006120 ORTHO05D007913 4.5e-132 475.3 533 48.0
CSS0019172 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 5.9e-132 474.9 588 47.3
Glyma.06G146400 Glycine max HOM05D006120 ORTHO05D007913 1.0e-131 474.2 529 49.0
Glyma.04G219500 Glycine max HOM05D006120 ORTHO05D007913 1.7e-131 473.4 527 49.0
SalBow5G3003 Salvia bowleyana HOM05D006120 ORTHO05D007913 2.9e-131 472.6 573 46.1
Hma1.2p1_0375F.1_g138700 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 3.8e-131 472.2 523 49.3
RcHm_v2.0_Chr2g0116371 Rosa chinensis HOM05D006120 ORTHO05D007913 3.8e-131 472.2 584 45.9
SGA_v2.0_scaffold34G13619 Striga asiatica HOM05D006120 ORTHO05D007913 8.5e-131 471.1 570 47.4
MBI05_g43693_MAGBIO Magnolia biondii HOM05D006120 ORTHO05D007913 1.1e-130 470.7 533 48.4
MELO3C020949.2 Cucumis melo HOM05D006120 ORTHO05D007913 1.5e-130 470.3 542 47.6
FAN23G0349 Fragaria x ananassa HOM05D006120 ORTHO05D007913 1.5e-130 470.3 588 45.6
FAN19G1919 Fragaria x ananassa HOM05D006120 ORTHO05D007913 1.9e-130 469.9 591 45.3
MSTRG.15748 Avicennia marina HOM05D006120 ORTHO05D007913 5.5e-130 468.4 559 46.3
Lj1g0008968 Lotus japonicus HOM05D006120 ORTHO05D007913 1.6e-129 466.8 567 46.7
Eucgr.I00325 Eucalyptus grandis HOM05D006120 ORTHO05D007913 3.6e-129 465.7 521 48.0
SalBow5G0625 Salvia bowleyana HOM05D006120 ORTHO05D007913 1.4e-128 463.8 566 45.9
Medtr3g094840 Medicago truncatula HOM05D006120 ORTHO05D007913 3.0e-128 462.6 576 46.9
Phvul.009G139500 Phaseolus vulgaris HOM05D006120 ORTHO05D007913 4.0e-128 462.2 532 47.7
Thecc.01G112500 Theobroma cacao HOM05D006120 ORTHO05D007913 4.0e-128 462.2 586 46.8
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 3.4e-127 459.1 536 48.1
CSS0049107 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 5.7e-127 458.4 592 45.1
AT5G64860 Arabidopsis thaliana HOM05D006120 ORTHO05D007913 7.5e-127 458.0 533 46.3
Gohir.D03G045900 Gossypium hirsutum HOM05D006120 ORTHO05D007913 9.7e-127 457.6 570 45.4
Lalb_Chr08g0238881 Lupinus albus HOM05D006120 ORTHO05D007913 8.3e-126 454.5 560 46.6
Dinv19489 Davidia involucrata HOM05D006120 ORTHO05D007913 1.1e-125 454.1 317 70.0
Thhalv10003902m.g Eutrema salsugineum HOM05D006120 ORTHO05D007913 1.1e-125 454.1 533 46.7
Sc03g0004320 Simmondsia chinensis HOM05D006120 ORTHO05D007913 1.1e-125 454.1 313 73.2
CDE09G0932 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 1.4e-125 453.8 523 46.8
Gorai.003G047100 Gossypium raimondii HOM05D006120 ORTHO05D007913 1.4e-125 453.8 570 45.6
Carub.0008s2569 Capsella rubella HOM05D006120 ORTHO05D007913 1.8e-125 453.4 576 45.3
Duzib147G0722 Durio zibethinus HOM05D006120 ORTHO05D007913 3.1e-125 452.6 586 45.7
BcaB04g19998 Brassica carinata HOM05D006120 ORTHO05D007913 7.0e-125 451.4 549 45.4
Sp2g27940 Schrenkiella parvula HOM05D006120 ORTHO05D007913 7.0e-125 451.4 534 46.3
CDE11G1197 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 1.2e-124 450.7 523 46.5
BraA09t36539Z Brassica rapa HOM05D006120 ORTHO05D007913 5.9e-124 448.4 550 45.1
C09p10300 Brassica napus HOM05D006120 ORTHO05D007913 7.7e-124 448.0 580 45.2
ATR0564G344 Amborella trichopoda HOM05D006120 ORTHO05D007913 1.0e-123 447.6 521 46.1
PGR004G1464 Punica granatum HOM05D006120 ORTHO05D007913 2.2e-123 446.4 581 44.1
THA.LOC104818477 Tarenaya hassleriana HOM05D006120 ORTHO05D007913 3.8e-123 445.7 573 44.7
BcaC04g23275 Brassica carinata HOM05D006120 ORTHO05D007913 6.5e-123 444.9 579 45.1
DCAR_010077 Daucus carota HOM05D006120 ORTHO05D007913 1.5e-122 443.7 521 46.6
A09p08880 Brassica napus HOM05D006120 ORTHO05D007913 2.5e-122 443.0 581 44.2
Nn5g28915 Nelumbo nucifera HOM05D006120 ORTHO05D007913 1.2e-121 440.7 269 75.1
BolC9t53930H Brassica oleracea HOM05D006120 ORTHO05D007913 1.6e-121 440.3 580 45.0
vmacro12905 Vaccinium macrocarpon HOM05D006120 ORTHO05D007913 3.6e-121 439.1 258 78.7
COL.COLO4_11015 Corchorus olitorius HOM05D006120 ORTHO05D007913 6.1e-121 438.3 513 48.1
FAN28G2353 Fragaria x ananassa HOM05D006120 ORTHO05D007913 2.3e-120 436.4 571 44.3
Aa31LG1G17070 Aethionema arabicum HOM05D006120 ORTHO05D007913 5.7e-119 431.8 530 45.5
Os07g0627000 Oryza sativa ssp. japonica HOM05D006120 ORTHO05D007913 9.8e-119 431.0 536 44.4
unitig_88.g27738 Utricularia gibba HOM05D006120 ORTHO05D007913 1.3e-118 430.6 574 43.0
Zm00001eb328070 Zea mays HOM05D006120 ORTHO05D007913 1.1e-117 427.6 532 44.0
PSO675G5066 Papaver somniferum HOM05D006120 ORTHO05D007913 3.1e-117 426.0 260 74.6
Gohir.A02G135000 Gossypium hirsutum HOM05D006120 ORTHO05D007913 8.6e-115 417.9 309 65.4
HPP92_016849 Vanilla planifolia HOM05D006120 ORTHO05D007913 9.5e-114 414.5 544 43.4
AUR62016277 Chenopodium quinoa HOM05D006120 ORTHO05D007913 1.6e-113 413.7 592 43.8
CARHR278870 Cardamine hirsuta HOM05D006120 ORTHO05D007913 3.6e-113 412.5 520 44.4
Nitab4.5_0000471g0040 Nicotiana tabacum HOM05D006120 ORTHO05D007913 6.8e-104 381.7 490 44.9
SMO164G0070 Selaginella moellendorffii HOM05D006120 ORTHO05D007913 1.7e-99 367.1 521 39.5
Mapoly0007s0077 Marchantia polymorpha HOM05D006120 ORTHO05D007913 1.2e-95 354.4 520 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2612 Anthoceros agrestis HOM05D006120 ORTHO05D007913 1.3e-94 350.9 521 38.2
Rhsim10G0151000 Rhododendron simsii HOM05D006120 ORTHO05D007913 1.6e-92 344.0 963 29.2
Pp3c20_17800 Physcomitrium patens HOM05D006120 ORTHO05D007913 6.6e-91 338.6 523 37.9
Pp3c6_28760 Physcomitrium patens HOM05D006120 ORTHO05D007913 3.4e-87 326.2 523 36.9
CBR_g31505 Chara braunii HOM05D006120 ORTHO05D007913 4.4e-87 325.9 504 37.3
Pp3c8_6000 Physcomitrium patens HOM05D006120 ORTHO05D007913 9.9e-87 324.7 520 36.5
CBR_g16839 Chara braunii HOM05D006120 ORTHO05D007913 1.9e-82 310.5 243 61.3
Cpa.g.sc196.11 Carica papaya HOM05D006120 ORTHO05D007913 6.8e-80 302.0 197 74.6
MCO01G332 Micromonas commoda HOM05D006120 ORTHO05D007913 1.4e-69 267.7 305 47.2
SMO164G0033 Selaginella moellendorffii HOM05D006120 ORTHO05D007913 6.0e-68 262.3 251 53.8
Cre03.g181500 Chlamydomonas reinhardtii HOM05D006120 ORTHO05D007913 1.9e-66 257.3 298 46.3
Hma1.2p1_0375F.1_g138710 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 5.3e-56 222.6 135 77.8
MD01G1019100 Malus domestica HOM05D006120 ORTHO05D007913 1.3e-46 191.4 182 54.9
PRCOL_00006523 Prasinoderma coloniale HOM05D006120 ORTHO05D007913 6.5e-46 189.1 223 45.7
Hma1.2p1_0375F.1_g138730 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 1.1e-40 171.8 96 78.1
SEGI_21408 Sequoiadendron giganteum HOM05D006120 ORTHO05D007913 2.0e-34 151.0 107 63.6
SEGI_26254 Sequoiadendron giganteum HOM05D006120 ORTHO05D007913 1.4e-29 134.8 89 61.8
vmacro12904 Vaccinium macrocarpon HOM05D006120 ORTHO05D007913 4.7e-28 129.8 105 63.8
Cc00_g25280 Coffea canephora HOM05D006120 ORTHO05D007913 1.7e-25 121.3 111 55.9
Cc03_g11750 Coffea canephora HOM05D006120 ORTHO05D007913 1.7e-25 121.3 111 55.9
BolC2t12429H Brassica oleracea HOM05D006120 ORTHO05D042482 1.8e-11 74.7 90 47.8
SEGI_23685 Sequoiadendron giganteum HOM05D006120 ORTHO05D007913 1.8e-11 74.7 79 49.4
C02p63630 Brassica napus HOM05D006120 ORTHO05D042482 5.2e-11 73.2 64 56.2
Atru.chr1.3653 Acer truncatum HOM05D006120 ORTHO05D007913 2.2e-09 67.8 60 53.3
MD01G1019200 Malus domestica HOM05D006120 ORTHO05D007913 5.4e-08 63.2 41 63.4
Cfa019951 Carpinus fangiana HOM05D005318 ORTHO05D006791 1.0e-06 58.9 215 25.6
Lsat_1_v5_gn_8_83900 Lactuca sativa HOM05D005318 ORTHO05D006791 1.7e-06 58.2 217 25.3
MD00G1025200 Malus domestica HOM05D005318 ORTHO05D006791 1.7e-06 58.2 215 25.1
Eucgr.K01679 Eucalyptus grandis HOM05D005318 ORTHO05D006791 6.5e-06 56.2 216 25.9
BolC4t21874H Brassica oleracea HOM05D005318 ORTHO05D006791 8.5e-06 55.8 222 23.4


User provided reference genes

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