Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g125000 Amaranthus hybridus HOM05D004004 ORTHO05D003284 2.2e-66 255.4 121 100.0
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 4.3e-33 144.8 128 56.2
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 6.2e-24 114.4 140 46.4
Nitab4.5_0005980g0010 Nicotiana tabacum HOM05D004004 ORTHO05D003284 4.4e-22 108.2 137 50.4
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 9.8e-22 107.1 133 45.9
Haze_03875 Corylus avellana HOM05D004004 ORTHO05D003284 1.9e-20 102.8 133 45.1
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 2.4e-20 102.4 129 48.1
Nitab4.5_0003001g0020 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.4e-20 102.4 133 46.6
Haze_03857 Corylus avellana HOM05D004004 ORTHO05D003284 4.1e-20 101.7 133 44.4
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 1.2e-19 100.1 137 43.1
Peaxi162Scf00418g00071 Petunia axillaris HOM05D004004 ORTHO05D003284 2.7e-19 99.0 141 46.1
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 3.5e-19 98.6 133 43.6
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 3.5e-19 98.6 142 41.5
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 7.8e-19 97.4 142 40.8
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 2.3e-18 95.9 142 43.0
SalBow5G1136 Salvia bowleyana HOM05D004004 ORTHO05D003284 3.0e-18 95.5 129 42.6
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 3.9e-18 95.1 136 45.6
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 6.6e-18 94.4 129 42.6
Potri.007G021200 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.5e-17 93.2 134 43.3
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 1.5e-17 93.2 98 54.1
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 2.5e-17 92.4 134 40.3
QL06p035435 Quercus lobata HOM05D004004 ORTHO05D003284 5.6e-17 91.3 133 39.8
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 7.3e-17 90.9 137 42.3
Sabra07G0018100 Salix brachista HOM05D004004 ORTHO05D003284 9.5e-17 90.5 140 40.7
Migut.L00026 Erythranthe guttata HOM05D004004 ORTHO05D003284 1.2e-16 90.1 133 45.1
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 1.2e-16 90.1 146 37.0
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 1.2e-16 90.1 147 40.1
CSS0049012 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 2.1e-16 89.4 141 41.1
Ciclev10027136m.g Citrus clementina HOM05D004004 ORTHO05D003284 2.1e-16 89.4 133 42.1
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 3.6e-16 88.6 75 58.7
MD02G1143000 Malus domestica HOM05D004004 ORTHO05D003284 4.7e-16 88.2 130 42.3
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 8.1e-16 87.4 134 39.6
CAN.G358.44 Capsicum annuum HOM05D004004 ORTHO05D003284 2.3e-15 85.9 142 39.4
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 5.2e-15 84.7 133 42.9
RcHm_v2.0_Chr2g0100871 Rosa chinensis HOM05D004004 ORTHO05D003284 5.2e-15 84.7 139 38.8
Duzib187G1158 Durio zibethinus HOM05D004004 ORTHO05D003284 1.2e-14 83.6 132 41.7
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 1.2e-14 83.6 125 41.6
Eucgr.I02406 Eucalyptus grandis HOM05D004004 ORTHO05D003284 2.0e-14 82.8 138 41.3
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.0e-14 82.8 129 40.3
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.0e-14 82.8 128 41.4
TAR381G1189 Trochodendron aralioides HOM05D004004 ORTHO05D003284 2.0e-14 82.8 137 40.1
CiPaw.08G139600 Carya illinoinensis HOM05D004004 ORTHO05D003284 2.6e-14 82.4 129 34.9
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.6e-14 82.4 79 51.9
PGR119G0532 Punica granatum HOM05D004004 ORTHO05D003284 2.6e-14 82.4 134 43.3
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 2.6e-14 82.4 125 36.0
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 3.4e-14 82.0 107 47.7
MD15G1256400 Malus domestica HOM05D004004 ORTHO05D003284 3.4e-14 82.0 131 41.2
Prupe.7G158500 Prunus persica HOM05D004004 ORTHO05D003284 3.4e-14 82.0 129 40.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.4e-14 81.6 85 48.2
FvH4_1g12761 Fragaria vesca HOM05D004004 ORTHO05D003284 4.4e-14 81.6 129 39.5
Manes.02G097000 Manihot esculenta HOM05D004004 ORTHO05D003284 4.4e-14 81.6 134 38.8
Psat2g157520 Pisum sativum HOM05D004004 ORTHO05D003284 2.2e-13 79.3 79 51.9
CsaV3_6G046550 Cucumis sativus L. HOM05D004004 ORTHO05D003284 2.9e-13 79.0 81 51.9
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.9e-13 79.0 72 54.2
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 3.7e-13 78.6 77 49.4
Cfa006894 Carpinus fangiana HOM05D004004 ORTHO05D003284 4.9e-13 78.2 104 46.2
Manes.01G138700 Manihot esculenta HOM05D004004 ORTHO05D003284 4.9e-13 78.2 135 37.0
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 6.4e-13 77.8 79 50.6
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 8.3e-13 77.4 71 54.9
Duzib147G0117 Durio zibethinus HOM05D004004 ORTHO05D003284 1.1e-12 77.0 73 52.1
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.4e-12 75.9 95 47.4
Aqoxy6G01170 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 2.4e-12 75.9 143 36.4
Actinidia19203 Actinidia chinensis HOM05D004004 ORTHO05D003284 3.2e-12 75.5 132 36.4
ClCG01G019820 Citrullus lanatus HOM05D004004 ORTHO05D003284 3.2e-12 75.5 79 50.6
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 4.1e-12 75.1 126 38.9
ECA238G4041 Erigeron canadensis HOM05D004004 ORTHO05D003284 5.4e-12 74.7 82 51.2
MBI18_g28925_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 7.1e-12 74.3 125 41.6
MELO3C007853.2 Cucumis melo HOM05D004004 ORTHO05D003284 9.2e-12 73.9 79 50.6
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 1.6e-11 73.2 82 47.6
Gohir.A12G062900 Gossypium hirsutum HOM05D004004 ORTHO05D003284 2.1e-11 72.8 73 52.1
Gohir.D12G062800 Gossypium hirsutum HOM05D004004 ORTHO05D003284 2.1e-11 72.8 73 52.1
HanXRQChr14g0440621 Helianthus annuus HOM05D004004 ORTHO05D003284 2.1e-11 72.8 82 50.0
Lsat_1_v5_gn_2_77660 Lactuca sativa HOM05D004004 ORTHO05D003284 2.1e-11 72.8 127 39.4
PGSC0003DMG400038828 Solanum tuberosum HOM05D004004 ORTHO05D003284 2.1e-11 72.8 110 45.5
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 3.5e-11 72.0 137 38.7
Sed0026549 Sechium edule HOM05D004004 ORTHO05D003284 3.5e-11 72.0 93 43.0
TAR381G0545 Trochodendron aralioides HOM05D000607 ORTHO05D003284 4.6e-11 71.6 128 37.5
Gorai.008G065800 Gossypium raimondii HOM05D004004 ORTHO05D003284 6.0e-11 71.2 73 50.7
MBI16_g26156_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 7.8e-11 70.9 91 44.0
Potri.006G079400 Populus trichocarpa HOM05D004004 ORTHO05D003284 7.8e-11 70.9 126 38.1
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 1.0e-10 70.5 77 48.1
DCAR_025966 Daucus carota HOM05D004004 ORTHO05D003284 1.3e-10 70.1 84 48.8
Nn5g29686 Nelumbo nucifera HOM05D004004 ORTHO05D003284 1.3e-10 70.1 86 41.9
Zm00001eb432750 Zea mays HOM05D004004 ORTHO05D003284 1.3e-10 70.1 139 36.7
MBI18_g28922_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 1.7e-10 69.7 127 39.4
RcHm_v2.0_Chr6g0301541 Rosa chinensis HOM05D004004 ORTHO05D003284 3.0e-10 68.9 107 39.3
SEGI_40269 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 3.0e-10 68.9 124 36.3
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 3.9e-10 68.6 76 47.4
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 3.9e-10 68.6 125 32.0
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 5.1e-10 68.2 125 35.2
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 5.1e-10 68.2 125 35.2
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 6.6e-10 67.8 88 43.2
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 6.6e-10 67.8 88 43.2
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 6.6e-10 67.8 88 43.2
PSO675G0710 Papaver somniferum HOM05D004004 ORTHO05D003284 6.6e-10 67.8 72 47.2
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 8.6e-10 67.4 126 36.5
Nn1g04907 Nelumbo nucifera HOM05D004004 ORTHO05D003284 8.6e-10 67.4 100 40.0
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 8.6e-10 67.4 77 48.1
vmacro22230 Vaccinium macrocarpon HOM05D004004 ORTHO05D003284 8.6e-10 67.4 76 46.1
Migut.N00981 Erythranthe guttata HOM05D004004 ORTHO05D003284 1.1e-09 67.0 127 33.9
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 1.1e-09 67.0 128 35.2
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 1.5e-09 66.6 73 45.2
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 1.5e-09 66.6 73 45.2
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 1.9e-09 66.2 103 40.8
Eucgr.F01872 Eucalyptus grandis HOM05D004004 ORTHO05D003284 1.9e-09 66.2 83 41.0
MD08G1026800 Malus domestica HOM05D004004 ORTHO05D003284 1.9e-09 66.2 93 41.9
PGR031G3823 Punica granatum HOM05D004004 ORTHO05D003284 1.9e-09 66.2 109 38.5
Actinidia22847 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.5e-09 65.9 79 41.8
CSS0023371 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 2.5e-09 65.9 133 33.8
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 3.3e-09 65.5 94 42.6
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 3.3e-09 65.5 74 44.6
Oeu025680.1 Olea europaea HOM05D004004 ORTHO05D003284 4.3e-09 65.1 125 34.4
Atru.chr13.424 Acer truncatum HOM05D004004 ORTHO05D003284 5.6e-09 64.7 91 38.5
HanXRQChr09g0250531 Helianthus annuus HOM05D004004 ORTHO05D003284 5.6e-09 64.7 82 45.1
Potri.002G032800 Populus trichocarpa HOM05D004004 ORTHO05D003284 9.5e-09 63.9 90 35.6
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 9.5e-09 63.9 93 37.6
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 1.2e-08 63.5 99 35.4
PGR031G0975 Punica granatum HOM05D004004 ORTHO05D003284 1.2e-08 63.5 76 43.4
Actinidia01655 Actinidia chinensis HOM05D004004 ORTHO05D003284 1.6e-08 63.2 97 35.1
CARHR186920 Cardamine hirsuta HOM05D008255 ORTHO05D003284 1.6e-08 63.2 73 42.5
CDE06G0974 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 2.8e-08 62.4 125 32.8
Sp3g04810 Schrenkiella parvula HOM05D008255 ORTHO05D003284 2.8e-08 62.4 116 31.0
CDE06G2437 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 3.6e-08 62.0 125 35.2
Ciclev10002820m.g Citrus clementina HOM05D004004 ORTHO05D003284 3.6e-08 62.0 95 37.9
HanXRQChr09g0250491 Helianthus annuus HOM05D000607 ORTHO05D003284 3.6e-08 62.0 79 40.5
CDE06G0543 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 4.7e-08 61.6 125 34.4
Lsat_1_v5_gn_4_117321 Lactuca sativa HOM05D000607 ORTHO05D003284 4.7e-08 61.6 70 40.0
Manes.13G076069 Manihot esculenta HOM05D004004 ORTHO05D003284 4.7e-08 61.6 126 34.9
Carub.0006s2427 Capsella rubella HOM05D008255 ORTHO05D003284 6.2e-08 61.2 117 34.2
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 6.2e-08 61.2 128 30.5
Haze_22541 Corylus avellana HOM05D004004 ORTHO05D003284 6.2e-08 61.2 128 30.5
Sed0007242 Sechium edule HOM05D004004 ORTHO05D003284 6.2e-08 61.2 85 42.4
AT5G26690 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 8.1e-08 60.8 73 39.7
Potri.005G230300 Populus trichocarpa HOM05D004004 ORTHO05D003284 8.1e-08 60.8 91 35.2
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 1.1e-07 60.5 72 38.9
Manes.05G156200 Manihot esculenta HOM05D000607 ORTHO05D003284 1.1e-07 60.5 107 31.8
Lsat_1_v5_gn_2_77720 Lactuca sativa HOM05D004004 ORTHO05D003284 1.4e-07 60.1 69 49.3
Psat2g157480 Pisum sativum HOM05D010322 ORTHO05D012006 1.4e-07 60.1 71 42.3
HanXRQChr09g0250511 Helianthus annuus HOM05D004004 ORTHO05D003284 1.8e-07 59.7 77 40.3
Thhalv10021753m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 2.3e-07 59.3 76 38.2
SEGI_25089 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 3.1e-07 58.9 124 34.7
CDE08G1315 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 5.2e-07 58.2 125 34.4
Nn1g04908 Nelumbo nucifera HOM05D000607 ORTHO05D003284 5.2e-07 58.2 91 37.4
Solyc02g084940.1 Solanum lycopersicum HOM05D004004 ORTHO05D003284 5.2e-07 58.2 105 37.1
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 5.2e-07 58.2 80 41.2
C05p61350 Brassica napus HOM05D008255 ORTHO05D003284 6.8e-07 57.8 74 37.8
BraA01t04464Z Brassica rapa HOM05D008255 ORTHO05D003284 6.8e-07 57.8 74 37.8
Lj4P206T16 Lonicera japonica HOM05D004004 ORTHO05D003284 6.8e-07 57.8 46 56.5
Rhsim05G0125300 Rhododendron simsii HOM05D004004 ORTHO05D003284 8.9e-07 57.4 81 39.5
AL3G16680 Arabidopsis lyrata HOM05D008255 ORTHO05D003284 1.2e-06 57.0 76 36.8
AT3G05920 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 1.2e-06 57.0 76 36.8
PGR119G0576 Punica granatum HOM05D004004 ORTHO05D003284 1.2e-06 57.0 75 40.0
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 1.5e-06 56.6 93 34.4
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 1.5e-06 56.6 104 33.7
Gohir.A05G191800 Gossypium hirsutum HOM05D004004 ORTHO05D003284 1.5e-06 56.6 79 41.8
SEGI_19145 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 1.5e-06 56.6 96 37.5
Aa31LG5G16330 Aethionema arabicum HOM05D008255 ORTHO05D003284 2.0e-06 56.2 73 38.4
BolC1t05653H Brassica oleracea HOM05D008255 ORTHO05D003284 2.0e-06 56.2 72 37.5
Gohir.D05G195100 Gossypium hirsutum HOM05D004004 ORTHO05D003284 2.0e-06 56.2 79 41.8
Gorai.009G199900 Gossypium raimondii HOM05D004004 ORTHO05D003284 2.0e-06 56.2 79 41.8
Rhsim07G0216700 Rhododendron simsii HOM05D004004 ORTHO05D003284 2.0e-06 56.2 57 49.1
Hund05396 Selenicereus undatus HOM05D004004 ORTHO05D003284 2.0e-06 56.2 70 35.7
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 2.0e-06 56.2 69 40.6
Aqoxy4G00091 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 2.6e-06 55.8 87 35.6
Eucgr.H01343 Eucalyptus grandis HOM05D004004 ORTHO05D003284 4.4e-06 55.1 98 39.8
Nn1g09207 Nelumbo nucifera HOM05D004004 ORTHO05D003284 4.4e-06 55.1 83 39.8
Ah.13g069190 Amaranthus hybridus HOM05D000607 ORTHO05D000518 5.8e-06 54.7 89 38.2
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 5.8e-06 54.7 77 39.0
AUR62022233 Chenopodium quinoa HOM05D004004 ORTHO05D003284 5.8e-06 54.7 136 30.9
AUR62031945 Chenopodium quinoa HOM05D004004 ORTHO05D003284 5.8e-06 54.7 122 31.1
MELO3C005711.2 Cucumis melo HOM05D000607 ORTHO05D000518 5.8e-06 54.7 94 39.4
Rhsim07G0216600 Rhododendron simsii HOM05D004004 ORTHO05D003284 5.8e-06 54.7 64 46.9
SEGI_12155 Sequoiadendron giganteum HOM05D000607 ORTHO05D003284 5.8e-06 54.7 69 39.1
Sed0011612 Sechium edule HOM05D000607 ORTHO05D000518 7.6e-06 54.3 105 38.1
Lsat_1_v5_gn_9_81441 Lactuca sativa HOM05D000607 ORTHO05D003284 9.9e-06 53.9 71 42.3


User provided reference genes

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