Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g124490 Amaranthus hybridus HOM05D000811 ORTHO05D007840 1.8e-30 135.2 66 100.0
AUR62043612 Chenopodium quinoa HOM05D000811 ORTHO05D007840 1.2e-24 115.9 66 84.8
AUR62044454 Chenopodium quinoa HOM05D000811 ORTHO05D007840 1.2e-24 115.9 66 84.8
Peaxi162Scf00083g00821 Petunia axillaris HOM05D000811 ORTHO05D007840 2.0e-24 115.2 66 80.3
EL10As8g23838 Beta vulgaris HOM05D001533 ORTHO05D003743 9.8e-24 112.8 66 80.3
CAN.G1671.2 Capsicum annuum HOM05D000811 ORTHO05D007840 9.8e-24 112.8 66 77.3
Sc16g0002060 Simmondsia chinensis HOM05D000811 ORTHO05D007840 9.8e-24 112.8 66 81.8
SGA_v2.0_scaffold137G35079 Striga asiatica HOM05D000811 ORTHO05D007840 9.8e-24 112.8 66 80.3
MELO3C007891.2 Cucumis melo HOM05D000811 ORTHO05D007840 1.3e-23 112.5 64 79.7
Sed0020033 Sechium edule HOM05D000811 ORTHO05D007840 1.3e-23 112.5 64 79.7
Sopen02g028830 Solanum pennellii HOM05D000811 ORTHO05D007840 1.3e-23 112.5 66 77.3
Solyc02g084030.3 Solanum lycopersicum HOM05D000811 ORTHO05D007840 1.7e-23 112.1 66 77.3
CsaV3_6G046980 Cucumis sativus L. HOM05D000811 ORTHO05D007840 2.2e-23 111.7 64 78.1
Migut.H01151 Erythranthe guttata HOM05D000811 ORTHO05D007840 3.7e-23 110.9 66 78.8
THA.LOC104807489 Tarenaya hassleriana HOM05D000811 ORTHO05D007840 3.7e-23 110.9 66 77.3
CAN.G724.41 Capsicum annuum HOM05D000811 ORTHO05D007840 4.8e-23 110.5 66 75.8
DCAR_021499 Daucus carota HOM05D000811 ORTHO05D007840 4.8e-23 110.5 66 72.7
CDE08G1305 Ceratophyllum demersum HOM05D000811 ORTHO05D007840 6.3e-23 110.2 66 74.2
ClCG01G020180 Citrullus lanatus HOM05D000811 ORTHO05D007840 6.3e-23 110.2 64 76.6
PSO541G4766 Papaver somniferum HOM05D000811 ORTHO05D007840 8.3e-23 109.8 66 78.8
Prupe.1G202800 Prunus persica HOM05D000811 ORTHO05D007840 8.3e-23 109.8 66 77.3
QL06p033557 Quercus lobata HOM05D000811 ORTHO05D007840 8.3e-23 109.8 65 75.4
TAR625G1510 Trochodendron aralioides HOM05D000811 ORTHO05D007840 8.3e-23 109.8 66 75.8
PGSC0003DMG400003634 Solanum tuberosum HOM05D000811 ORTHO05D007840 1.1e-22 109.4 66 75.8
Cc00_g30270 Coffea canephora HOM05D000811 ORTHO05D007840 1.8e-22 108.6 66 75.8
Cc07_g10620 Coffea canephora HOM05D000811 ORTHO05D007840 1.8e-22 108.6 66 75.8
SalBow3G3717 Salvia bowleyana HOM05D000811 ORTHO05D007840 1.8e-22 108.6 66 77.3
Cpa.g.sc6.232 Carica papaya HOM05D000811 ORTHO05D007840 2.4e-22 108.2 66 77.3
Haze_03790 Corylus avellana HOM05D000811 ORTHO05D007840 2.4e-22 108.2 66 75.8
COL.COLO4_21928 Corchorus olitorius HOM05D000811 ORTHO05D007840 3.1e-22 107.8 66 75.8
Duzib264G0346 Durio zibethinus HOM05D000811 ORTHO05D007840 3.1e-22 107.8 66 75.8
Thecc.01G020800 Theobroma cacao HOM05D000811 ORTHO05D007840 3.1e-22 107.8 66 75.8
GSVIVG01018799001 Vitis vinifera HOM05D000811 ORTHO05D007840 3.1e-22 107.8 66 72.7
HanXRQChr15g0487231 Helianthus annuus HOM05D000811 ORTHO05D007840 4.1e-22 107.5 66 74.2
Medtr8g076060 Medicago truncatula HOM05D000811 ORTHO05D007840 4.1e-22 107.5 66 77.3
CSS0003821 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D007840 5.4e-22 107.1 66 74.2
Hund14040 Selenicereus undatus HOM05D000811 ORTHO05D007840 5.4e-22 107.1 66 75.8
arahy.Tifrunner.gnm1.ann1.IAHM14 Arachis hypogaea HOM05D000811 ORTHO05D007840 7.0e-22 106.7 66 74.2
Ca_22370_v3 Cicer arietinum L. HOM05D000811 ORTHO05D007840 7.0e-22 106.7 66 75.8
Gorai.008G063300 Gossypium raimondii HOM05D000811 ORTHO05D007840 7.0e-22 106.7 66 74.2
Cc00_g33000 Coffea canephora HOM05D000811 ORTHO05D007840 1.2e-21 105.9 66 74.2
Gohir.D12G060200 Gossypium hirsutum HOM05D000811 ORTHO05D007840 1.6e-21 105.5 66 72.7
PSO675G0258 Papaver somniferum HOM05D000811 ORTHO05D007840 1.6e-21 105.5 66 75.8
vmacro18419 Vaccinium macrocarpon HOM05D000811 ORTHO05D007840 1.6e-21 105.5 66 72.7
BcaC04g22934 Brassica carinata HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 72.7
C09p13720 Brassica napus HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 72.7
Carub.0003s3218 Capsella rubella HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 72.7
Hma1.2p1_2281F.1_g318770 Hydrangea macrophylla HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 75.8
Lj4g0023417 Lotus japonicus HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 74.2
Psat4g098520 Pisum sativum HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 74.2
PGR119G1393 Punica granatum HOM05D000811 ORTHO05D007840 2.0e-21 105.1 66 74.2
arahy.Tifrunner.gnm1.ann1.JKZZ7D Arachis hypogaea HOM05D000811 ORTHO05D007840 2.7e-21 104.8 66 72.7
CARHR108520 Cardamine hirsuta HOM05D000811 ORTHO05D007840 2.7e-21 104.8 66 72.7
ECA232G2345 Erigeron canadensis HOM05D000811 ORTHO05D007840 2.7e-21 104.8 66 71.2
BolC9t54263H Brassica oleracea HOM05D000811 ORTHO05D007840 3.5e-21 104.4 66 72.7
Ciclev10026355m.g Citrus clementina HOM05D000811 ORTHO05D007840 3.5e-21 104.4 64 71.9
Zm00001eb377760 Zea mays HOM05D000811 ORTHO05D007840 3.5e-21 104.4 66 74.2
Aa31LG8G15210 Aethionema arabicum HOM05D000811 ORTHO05D007840 4.5e-21 104.0 66 71.2
Lalb_Chr16g0391201 Lupinus albus HOM05D000811 ORTHO05D007840 4.5e-21 104.0 66 71.2
RcHm_v2.0_Chr3g0483661 Rosa chinensis HOM05D000811 ORTHO05D007840 4.5e-21 104.0 66 74.2
Atru.chr3.786 Acer truncatum HOM05D000811 ORTHO05D007840 5.9e-21 103.6 64 71.9
MSTRG.2702 Avicennia marina HOM05D000811 ORTHO05D007840 7.7e-21 103.2 66 74.2
BcaB07g31695 Brassica carinata HOM05D000811 ORTHO05D007840 7.7e-21 103.2 66 71.2
A09p11680 Brassica napus HOM05D000811 ORTHO05D007840 7.7e-21 103.2 66 71.2
BraA09t36813Z Brassica rapa HOM05D000811 ORTHO05D007840 7.7e-21 103.2 66 71.2
Manes.02G103100 Manihot esculenta HOM05D000811 ORTHO05D007840 7.7e-21 103.2 66 69.7
AT2G18030 Arabidopsis thaliana HOM05D000811 ORTHO05D007840 1.0e-20 102.8 66 71.2
TPR.G30060 Trifolium pratense HOM05D000811 ORTHO05D007840 1.0e-20 102.8 66 71.2
AL3G51180 Arabidopsis lyrata HOM05D000811 ORTHO05D007840 1.3e-20 102.4 66 69.7
Thhalv10022823m.g Eutrema salsugineum HOM05D000811 ORTHO05D007840 1.3e-20 102.4 66 71.2
FvH4_6g24560 Fragaria vesca HOM05D000811 ORTHO05D007840 1.7e-20 102.1 66 72.7
FAN14G3764 Fragaria x ananassa HOM05D000811 ORTHO05D007840 1.7e-20 102.1 66 72.7
Sp3g31460 Schrenkiella parvula HOM05D000811 ORTHO05D007840 1.7e-20 102.1 66 71.2
Potri.007G012900 Populus trichocarpa HOM05D000811 ORTHO05D007840 2.3e-20 101.7 66 69.7
TWI09G0870 Tripterygium wilfordii HOM05D000811 ORTHO05D007840 2.3e-20 101.7 66 72.7
FAN09G1557 Fragaria x ananassa HOM05D000811 ORTHO05D007840 3.8e-20 100.9 66 72.7
Lsat_1_v5_gn_4_146761 Lactuca sativa HOM05D000811 ORTHO05D007840 3.8e-20 100.9 66 69.7
Os06g0138100 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D007840 3.8e-20 100.9 66 74.2
Glyma.02G049400 Glycine max HOM05D000811 ORTHO05D007840 6.6e-20 100.1 66 69.7
Glyma.16G129800 Glycine max HOM05D000811 ORTHO05D007840 1.1e-19 99.4 66 69.7
Lalb_Chr05g0229871 Lupinus albus HOM05D000811 ORTHO05D007840 1.1e-19 99.4 66 69.7
ATR0147G018 Amborella trichopoda HOM05D000811 ORTHO05D007840 1.5e-19 99.0 66 69.7
RcHm_v2.0_Chr0c32g0501451 Rosa chinensis HOM05D000811 ORTHO05D007840 1.5e-19 99.0 66 71.2
RcHm_v2.0_Chr0c32g0501641 Rosa chinensis HOM05D000811 ORTHO05D007840 1.5e-19 99.0 66 71.2
RcHm_v2.0_Chr3g0483821 Rosa chinensis HOM05D000811 ORTHO05D007840 1.5e-19 99.0 66 71.2
Phvul.003G260900 Phaseolus vulgaris HOM05D000811 ORTHO05D007840 1.9e-19 98.6 66 68.2
Lsat_1_v5_gn_4_146701 Lactuca sativa HOM05D000811 ORTHO05D007840 5.5e-19 97.1 64 70.3
Sabra07G0009900 Salix brachista HOM05D000811 ORTHO05D007840 5.5e-19 97.1 66 68.2
VMungo0251G2049 Vigna mungo HOM05D000811 ORTHO05D007840 7.2e-19 96.7 66 66.7
Eucgr.J02409 Eucalyptus grandis HOM05D000811 ORTHO05D007840 1.2e-18 95.9 66 65.2
HPP92_025838 Vanilla planifolia HOM05D000811 ORTHO05D007840 2.8e-18 94.7 66 68.2
Eucgr.J02417 Eucalyptus grandis HOM05D000811 ORTHO05D007840 4.7e-18 94.0 66 63.6
Nitab4.5_0005721g0040 Nicotiana tabacum HOM05D000811 ORTHO05D007840 4.7e-18 94.0 55 78.2
Rhsim08G0034300 Rhododendron simsii HOM05D000811 ORTHO05D007840 1.0e-17 92.8 57 75.4
Cfa006960 Carpinus fangiana HOM05D000811 ORTHO05D007840 1.4e-17 92.4 59 72.9
Duzib147G1611 Durio zibethinus HOM05D000811 ORTHO05D007840 1.4e-17 92.4 66 65.2
CSS0011847 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D007840 1.8e-17 92.0 57 75.4
CiPaw.07G057400 Carya illinoinensis HOM05D000811 ORTHO05D007840 4.0e-17 90.9 57 75.4
unitig_37.g12157 Utricularia gibba HOM05D000811 ORTHO05D007840 8.9e-17 89.7 66 65.2
Nn5g29276 Nelumbo nucifera HOM05D000811 ORTHO05D007840 1.5e-16 89.0 55 70.9
Lj2A466G44 Lonicera japonica HOM05D000811 ORTHO05D007840 4.4e-16 87.4 57 71.9
Lj2A474G39 Lonicera japonica HOM05D000811 ORTHO05D007840 2.2e-15 85.1 57 70.2
SEGI_08967 Sequoiadendron giganteum HOM05D000811 ORTHO05D007840 1.5e-11 72.4 63 55.6
Cc00_g34170 Coffea canephora HOM05D000811 ORTHO05D007840 1.6e-10 68.9 66 56.1
CBR_g40417 Chara braunii HOM05D000811 ORTHO05D007840 3.4e-08 61.2 55 52.7
Pp3c19_10080 Physcomitrium patens HOM05D000811 ORTHO05D007840 1.3e-07 59.3 55 47.3
SMO239G0139 Selaginella moellendorffii HOM05D000811 ORTHO05D007840 1.7e-07 58.9 56 44.6
Mapoly0044s0097 Marchantia polymorpha HOM05D000811 ORTHO05D007840 2.2e-07 58.5 63 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1381 Anthoceros agrestis HOM05D000811 ORTHO05D007840 1.4e-06 55.8 57 47.4
Eucgr.J02411 Eucalyptus grandis HOM05D000811 ORTHO05D007840 9.2e-06 53.1 35 65.7


User provided reference genes

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