Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.1e-123 443.7 220 100.0
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.3e-100 368.6 208 86.1
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.3e-99 366.7 208 86.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 3.6e-91 338.6 209 78.9
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.4e-89 332.0 210 76.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 5.8e-89 331.3 209 79.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.7e-88 329.7 210 77.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.9e-88 328.9 210 76.7
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 4.9e-88 328.2 210 77.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 4.9e-88 328.2 210 77.6
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.9e-88 328.2 210 77.1
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.4e-87 326.6 210 75.7
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.9e-87 326.2 210 76.7
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 4.2e-87 325.1 210 75.2
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.7e-86 322.4 210 75.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 4.6e-86 321.6 208 75.0
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 4.6e-86 321.6 211 73.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.0e-85 320.5 211 74.4
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.3e-85 319.3 210 73.3
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.0e-85 318.9 182 84.6
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 5.1e-85 318.2 210 72.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 6.7e-85 317.8 210 74.3
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.5e-84 316.6 210 73.8
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.9e-84 316.2 210 73.3
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.9e-84 316.2 212 72.6
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.9e-84 316.2 210 73.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.5e-84 315.8 210 75.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.3e-84 315.5 212 72.2
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.3e-84 315.1 211 74.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 7.4e-84 314.3 212 71.7
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 9.6e-84 313.9 210 72.4
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.3e-83 313.5 212 72.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.6e-83 313.2 210 73.3
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.6e-83 313.2 211 73.9
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.8e-83 312.4 212 72.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.8e-83 312.4 210 72.9
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.7e-83 312.0 210 75.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.7e-83 312.0 212 71.7
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.7e-83 312.0 211 72.0
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 6.2e-83 311.2 210 73.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 6.2e-83 311.2 210 72.4
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-82 310.1 212 71.7
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.4e-82 310.1 210 73.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.1e-82 308.9 212 73.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.9e-82 307.8 210 72.4
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 9.0e-82 307.4 210 72.9
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.2e-81 307.0 210 72.9
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.2e-81 307.0 210 71.0
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.5e-81 306.6 213 71.4
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.6e-81 305.8 210 71.4
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.4e-81 305.4 210 71.4
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.3e-80 303.5 211 70.6
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.7e-80 303.1 210 70.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.7e-80 303.1 210 69.0
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 6.5e-80 301.2 210 72.9
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-79 300.1 209 69.4
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.2e-79 298.9 196 74.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 3.2e-79 298.9 208 71.6
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.5e-78 295.4 209 69.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.8e-77 293.1 210 67.6
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.3e-77 292.7 228 66.2
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 5.1e-77 291.6 210 66.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.1e-77 291.6 211 68.2
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 5.1e-77 291.6 209 68.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.1e-76 290.4 220 65.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.1e-76 290.4 210 66.7
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.5e-76 290.0 210 66.7
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.5e-76 290.0 209 69.4
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.5e-76 290.0 209 69.4
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.5e-76 290.0 210 68.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.9e-76 289.7 210 70.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.7e-76 288.1 210 66.2
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 9.6e-76 287.3 210 67.1
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.1e-75 286.2 183 76.0
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 2.8e-75 285.8 219 65.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 3.7e-75 285.4 222 64.9
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.8e-74 283.1 210 66.7
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.8e-74 283.1 210 66.7
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.1e-74 282.0 211 66.8
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.3e-74 281.6 210 66.2
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 5.3e-74 281.6 211 66.8
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 9.0e-74 280.8 184 75.0
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 5.9e-73 278.1 190 72.6
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 5.9e-73 278.1 210 65.2
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.2e-72 276.2 215 64.7
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.9e-72 275.8 211 65.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.9e-72 275.8 211 65.9
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.1e-71 273.9 193 71.0
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.5e-71 272.7 193 73.6
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 9.3e-71 270.8 212 64.2
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 9.3e-71 270.8 212 64.2
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.6e-70 270.0 213 63.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-70 269.6 211 64.0
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.1e-70 269.6 184 71.2
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.7e-70 269.2 211 64.0
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 7.9e-70 267.7 211 64.9
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.9e-70 267.7 290 52.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.0e-69 267.3 211 62.6
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.0e-69 267.3 184 72.3
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-69 266.9 211 63.0
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.3e-69 266.9 289 51.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.3e-69 266.2 184 71.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.8e-67 259.2 212 60.4
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.8e-67 259.2 189 68.8
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-66 257.3 184 69.0
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.4e-66 256.9 186 68.8
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 6.9e-66 254.6 209 56.5
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.5e-65 251.9 184 67.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.7e-65 251.1 194 64.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 3.8e-64 248.8 184 67.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 5.0e-64 248.4 187 69.0
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 6.5e-64 248.1 178 69.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 8.5e-64 247.7 182 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.5e-63 246.1 193 62.2
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.2e-63 245.7 203 60.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.2e-63 245.4 212 62.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.2e-63 245.4 203 59.1
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.6e-62 243.4 168 70.8
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.6e-62 243.4 174 70.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 7.9e-62 241.1 214 60.3
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 7.9e-62 241.1 214 60.3
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.5e-60 236.9 171 66.7
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.6e-60 236.1 209 60.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.3e-60 235.7 208 56.7
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 5.7e-60 235.0 212 56.6
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.7e-60 235.0 163 71.8
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 3.1e-58 229.2 157 72.0
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.0e-57 226.5 167 66.5
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.4e-57 225.7 208 57.2
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.9e-55 219.9 211 50.7
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 7.2e-55 218.0 209 51.2
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.7e-51 206.8 182 57.1
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 5.2e-45 185.3 189 53.4
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.6e-44 183.0 160 56.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.6e-41 173.7 208 43.3
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.1e-34 151.0 88 75.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.4e-34 150.6 84 82.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.0e-33 146.7 236 39.8
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.2e-30 137.5 206 34.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 8.0e-30 134.8 234 33.8
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.2e-29 132.1 74 82.4
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 3.4e-28 129.4 98 68.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.2e-25 120.9 140 45.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.0e-25 120.2 208 32.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.8e-24 115.9 94 62.8
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 7.3e-23 111.7 75 68.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.0e-12 77.0 78 57.7
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 9.8e-12 74.7 140 39.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 4.6e-09 65.9 195 26.7


User provided reference genes

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