Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 0.0e+00 1258.4 648 100.0
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.3e-282 975.3 652 78.7
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.1e-263 911.8 644 74.1
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 5.1e-250 867.8 602 74.3
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.6e-243 844.7 653 68.9
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 8.7e-226 787.3 653 63.4
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 5.7e-225 784.6 639 64.0
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 9.7e-225 783.9 648 62.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.6e-224 783.1 644 63.5
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.8e-224 781.6 638 66.1
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.1e-223 780.4 650 62.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.4e-223 779.2 652 63.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.1e-223 778.9 648 61.7
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.2e-221 772.7 639 64.5
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.5e-220 769.2 644 64.0
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 3.2e-220 768.8 659 61.9
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 7.2e-220 767.7 636 62.6
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.6e-219 766.5 637 63.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.6e-219 766.5 648 62.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-219 766.5 646 63.5
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.6e-219 765.4 650 61.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 4.6e-219 765.0 635 62.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 7.9e-219 764.2 656 61.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.0e-218 763.8 654 61.5
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 2.3e-218 762.7 651 61.8
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.1e-217 760.4 638 62.1
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.1e-217 760.4 650 61.1
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 3.7e-216 755.4 641 61.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.1e-215 752.3 650 61.5
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.3e-215 751.5 658 59.9
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.7e-214 747.7 670 60.6
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.0e-213 747.3 653 60.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 6.5e-213 744.6 628 63.4
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.4e-212 743.4 656 59.3
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 9.4e-212 740.7 643 61.1
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.2e-211 740.3 643 61.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.4e-210 736.9 649 60.7
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 3.0e-210 735.7 638 59.7
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 5.2e-210 734.9 643 60.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 8.8e-210 734.2 651 60.4
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.1e-209 733.8 642 60.1
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.5e-209 733.4 635 61.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 7.4e-209 731.1 655 58.5
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.3e-208 730.3 655 59.2
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 4.8e-208 728.4 651 59.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 6.3e-208 728.0 649 59.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.4e-207 726.9 643 61.0
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 9.1e-207 724.2 616 61.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.6e-206 722.6 641 59.8
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.6e-206 722.6 637 58.9
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.5e-206 722.2 644 59.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.5e-206 722.2 634 60.3
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 4.5e-206 721.8 649 59.0
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 4.5e-206 721.8 649 59.0
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.5e-206 721.8 694 56.3
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.9e-205 719.2 644 60.4
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 6.5e-205 718.0 648 58.6
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.9e-204 716.5 644 58.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.2e-204 715.7 662 57.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 4.2e-204 715.3 644 58.2
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 9.4e-204 714.1 649 58.2
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.6e-203 713.4 646 59.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.6e-203 713.4 638 60.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.0e-202 710.7 639 58.5
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.8e-202 709.9 646 60.1
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 4.0e-202 708.8 644 58.5
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 5.7e-201 704.9 633 59.2
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 9.7e-201 704.1 643 58.3
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 3.7e-200 702.2 638 59.4
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.1e-199 700.7 636 59.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.4e-199 699.5 643 57.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 5.3e-199 698.4 647 58.0
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 9.1e-199 697.6 646 56.7
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.2e-198 697.2 645 58.1
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 4.7e-195 685.3 647 57.5
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 6.8e-194 681.4 666 56.6
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 4.4e-193 678.7 635 57.5
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.1e-191 674.1 633 57.3
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 9.1e-191 671.0 503 67.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-188 663.7 651 57.6
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.2e-188 661.4 578 61.2
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 9.5e-188 661.0 633 55.6
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 6.8e-186 654.8 636 53.6
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.8e-183 646.7 562 61.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.3e-181 640.6 668 53.0
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 6.6e-181 638.3 484 66.5
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.6e-174 615.5 541 58.0
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 8.0e-171 604.7 525 59.4
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 6.8e-170 601.7 686 50.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-167 594.3 694 49.7
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 7.3e-164 581.6 533 59.1
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 6.8e-162 575.1 495 58.4
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.1e-159 567.8 652 49.2
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 3.5e-158 562.8 652 48.3
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-150 537.3 589 51.8
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 5.1e-149 532.3 544 52.8
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.6e-147 527.3 490 60.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.8e-131 473.4 634 42.9
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.9e-128 463.4 439 61.3
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 6.9e-122 442.2 746 38.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 4.2e-119 433.0 532 48.1
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.4e-111 407.9 680 39.7
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 4.1e-98 363.2 282 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 3.8e-96 356.7 642 36.1
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.0e-92 344.4 377 54.1
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.3e-92 343.6 332 55.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.7e-92 342.0 572 37.2
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 7.5e-84 315.8 330 53.3
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 5.0e-80 303.1 290 58.3
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.5e-79 301.6 435 47.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 3.2e-79 300.4 285 58.9
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.7e-73 280.8 499 37.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.6e-70 271.6 283 54.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.0e-69 268.9 332 46.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 2.0e-65 254.6 355 45.1
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.3e-61 241.1 203 65.0
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.7e-59 235.0 168 69.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.3e-56 224.6 149 70.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.3e-53 214.5 195 59.5
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.9e-50 204.9 380 38.7
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.3e-40 171.4 155 56.8
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.8e-37 161.8 323 33.1
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.1e-34 152.5 725 26.6
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.9e-31 141.7 104 59.6
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 2.6e-28 131.3 178 44.4
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 9.0e-21 106.3 99 59.6
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.9e-15 88.6 118 46.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 9.6e-15 86.3 65 67.7
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.7e-14 84.3 60 75.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.4e-13 81.6 65 64.6
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 9.0e-13 79.7 118 44.9
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 4.5e-12 77.4 55 65.5
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.3e-11 75.9 97 41.2
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.3e-11 75.9 88 46.6
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.3e-11 75.9 48 75.0
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.7e-11 75.5 159 35.8


User provided reference genes

Program Settings