Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g123060 Amaranthus hybridus HOM05D010197 ORTHO05D000039 3.7e-182 641.3 308 100.0
Ah.02g123160 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.3e-70 270.8 270 53.7
Ah.02g123030 Amaranthus hybridus HOM05D010197 ORTHO05D000039 8.5e-70 268.1 167 81.4
Ah.02g127130 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.4e-67 260.8 343 45.2
Ah.02g127140 Amaranthus hybridus HOM05D000007 ORTHO05D000039 9.1e-64 248.1 344 45.6
Ah.02g127160 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.6e-60 237.3 343 44.3
Ah.02g127190 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.8e-59 233.8 356 40.7
Ah.02g127200 Amaranthus hybridus HOM05D000007 ORTHO05D000039 7.4e-58 228.4 370 40.0
Ah.02g127170 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.8e-56 223.8 340 40.9
Ah.02g127150 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.6e-52 210.7 341 40.2
Ah.02g127360 Amaranthus hybridus HOM05D000007 ORTHO05D000039 3.8e-38 162.9 254 41.3
AUR62008257 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.0e-22 110.2 293 32.4
AUR62036911 Chenopodium quinoa HOM05D000007 ORTHO05D000017 7.8e-15 85.5 275 27.3
AUR62031014 Chenopodium quinoa HOM05D010197 ORTHO05D000039 3.9e-14 83.2 158 37.3
AUR62033044 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.3e-13 80.1 325 27.1
AUR62008252 Chenopodium quinoa HOM05D010197 ORTHO05D000039 1.2e-12 78.2 158 35.4
AUR62039681 Chenopodium quinoa HOM05D000007 ORTHO05D000039 1.6e-12 77.8 265 28.3
AUR62042008 Chenopodium quinoa HOM05D000007 ORTHO05D000039 1.1e-11 75.1 326 26.4
AUR62036918 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.1e-11 73.6 272 26.8
AUR62031008 Chenopodium quinoa HOM05D010197 ORTHO05D000039 5.2e-11 72.8 271 26.9
AUR62031019 Chenopodium quinoa HOM05D001612 ORTHO05D000039 1.5e-10 71.2 132 33.3
AUR62033045 Chenopodium quinoa HOM05D000007 ORTHO05D000039 2.6e-10 70.5 317 25.2
EL10Ac5g10801 Beta vulgaris HOM05D010197 ORTHO05D000039 3.4e-10 70.1 169 30.2
Peaxi162Scf00231g00028 Petunia axillaris HOM05D000007 ORTHO05D000017 9.9e-10 68.6 278 28.4
AUR62014878 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.7e-09 67.8 165 33.9
AUR62031006 Chenopodium quinoa HOM05D010197 ORTHO05D000039 1.1e-08 65.1 141 31.9
Lalb_Chr20g0119291 Lupinus albus HOM05D000007 ORTHO05D000017 1.1e-08 65.1 259 28.2
Gorai.006G218400 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.4e-08 64.7 193 29.5
AUR62031007 Chenopodium quinoa HOM05D010197 ORTHO05D000039 3.2e-08 63.5 133 32.3
Rhsim04G0044400 Rhododendron simsii HOM05D000007 ORTHO05D000521 4.1e-08 63.2 282 24.8
SGA_v2.0_scaffold7G03763 Striga asiatica HOM05D000007 ORTHO05D000017 5.4e-08 62.8 282 28.4
CiPaw.09G103200 Carya illinoinensis HOM05D000007 ORTHO05D000017 7.1e-08 62.4 276 26.4
Prupe.3G110400 Prunus persica HOM05D000007 ORTHO05D000039 9.2e-08 62.0 267 27.3
TWI34G0173 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 1.2e-07 61.6 286 28.0
vmacro00490 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.6e-07 61.2 190 28.9
CAN.G500.29 Capsicum annuum HOM05D000007 ORTHO05D000017 2.1e-07 60.8 266 27.1
AUR62008259 Chenopodium quinoa HOM05D010197 ORTHO05D000039 2.1e-07 60.8 116 31.0
PSO724G0100 Papaver somniferum HOM05D000007 ORTHO05D000017 2.7e-07 60.5 303 22.4
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 3.5e-07 60.1 284 26.4
CSS0028402 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.6e-07 59.7 337 24.3
CAN.G500.25 Capsicum annuum HOM05D000007 ORTHO05D000017 4.6e-07 59.7 266 27.1
PGSC0003DMG400039953 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.0e-07 59.3 277 25.6
PGSC0003DMG400043993 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.0e-07 59.3 262 27.1
VMungo1215G0255 Vigna mungo HOM05D000007 ORTHO05D000017 6.0e-07 59.3 277 23.5
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.0e-06 58.5 271 24.0
ECA232G4348 Erigeron canadensis HOM05D000007 ORTHO05D000017 1.3e-06 58.2 269 25.7
Lj2P928T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.3e-06 58.2 272 27.9
Lj2P943T5 Lonicera japonica HOM05D000007 ORTHO05D000017 1.3e-06 58.2 272 27.9
AT3G23880 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 1.7e-06 57.8 272 24.6
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.7e-06 57.8 256 28.5
Gohir.A08G015200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.7e-06 57.8 241 24.9
AUR62010298 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.3e-06 57.4 251 27.1
Cc00_g01300 Coffea canephora HOM05D000007 ORTHO05D000017 2.3e-06 57.4 256 26.2
Glyma.07G265800 Glycine max HOM05D000007 ORTHO05D000017 2.3e-06 57.4 274 24.1
Gorai.004G021700 Gossypium raimondii HOM05D000007 ORTHO05D000017 2.3e-06 57.4 241 24.9
Cc02_g08310 Coffea canephora HOM05D000007 ORTHO05D000039 3.0e-06 57.0 266 25.9
Gohir.A08G015148 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.0e-06 57.0 237 25.3
DCAR_012847 Daucus carota HOM05D000007 ORTHO05D000039 3.9e-06 56.6 282 23.4
FAN14G2468 Fragaria x ananassa HOM05D003981 ORTHO05D003666 5.1e-06 56.2 280 26.8
Nitab4.5_0004974g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.1e-06 56.2 186 29.6
SalBow1G0360 Salvia bowleyana HOM05D000007 ORTHO05D000521 5.1e-06 56.2 257 26.8
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 6.6e-06 55.8 255 25.5
Haze_06947 Corylus avellana HOM05D000007 ORTHO05D000017 6.6e-06 55.8 280 23.2
Ah.15g091650 Amaranthus hybridus HOM05D010197 ORTHO05D000039 8.6e-06 55.5 109 35.8
AUR62039096 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.6e-06 55.5 281 22.8
PGSC0003DMG400024829 Solanum tuberosum HOM05D000007 ORTHO05D000039 8.6e-06 55.5 286 26.2


User provided reference genes

Program Settings