Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 4.6e-199 697.6 326 100.0
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 3.1e-171 605.1 358 81.0
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 7.5e-93 344.7 356 53.9
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 7.9e-34 148.7 350 30.6
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 3.0e-33 146.7 352 28.4
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.9e-33 146.4 342 30.1
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.4e-32 142.9 356 28.9
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.4e-32 142.9 342 30.7
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.8e-30 137.5 358 30.7
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.1e-30 136.7 362 28.2
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.1e-30 136.3 348 29.3
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 5.3e-30 136.0 343 27.4
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 7.0e-30 135.6 382 28.0
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 9.1e-30 135.2 343 27.7
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 9.1e-30 135.2 362 29.0
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.2e-29 134.8 343 28.3
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.0e-29 134.0 353 28.0
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 2.6e-29 133.7 358 30.2
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 4.5e-29 132.9 308 30.2
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.0e-28 129.4 359 30.4
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 4.2e-27 126.3 368 28.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.4e-25 121.3 350 28.9
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.8e-25 120.9 337 27.3
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 3.9e-25 119.8 350 28.9
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.6e-24 117.1 400 26.0
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.3e-23 114.8 352 26.7
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 2.2e-23 114.0 348 25.6
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 2.2e-23 114.0 334 28.7
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 3.7e-23 113.2 215 32.6
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 3.7e-23 113.2 215 32.6
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 1.8e-22 110.9 340 27.9
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 5.3e-22 109.4 304 28.9
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 4.5e-21 106.3 364 24.2
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 1.7e-20 104.4 321 26.8
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 6.5e-20 102.4 340 26.2
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 5.5e-19 99.4 301 28.9
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 7.2e-19 99.0 356 26.4
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 2.7e-18 97.1 366 24.0
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 5.2e-17 92.8 361 22.7
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 5.2e-17 92.8 194 33.0
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 8.8e-17 92.0 349 24.6
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.2e-16 91.7 220 27.7
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 1.5e-16 91.3 385 23.1
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.7e-15 87.8 228 29.4
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 2.8e-15 87.0 188 33.0
Zm00001eb146000 Zea mays HOM05D000664 ORTHO05D000491 4.8e-15 86.3 210 28.6
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 6.3e-15 85.9 342 24.9
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 8.2e-15 85.5 226 29.2
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.4e-14 84.0 342 25.7
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 3.1e-14 83.6 227 27.3
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 5.3e-14 82.8 251 28.3
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 5.3e-14 82.8 251 27.5
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 5.3e-14 82.8 223 28.7
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 5.3e-14 82.8 251 27.5
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 7.0e-14 82.4 223 25.6
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 7.0e-14 82.4 171 30.4
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 1.6e-13 81.3 193 29.0
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.6e-13 81.3 342 24.0
Nitab4.5_0000413g0140 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.0e-13 80.9 344 25.6
Nitab4.5_0013676g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.9e-13 79.3 344 25.3
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 1.0e-12 78.6 273 27.1
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 1.7e-12 77.8 232 27.6
Dinv26463 Davidia involucrata HOM05D000664 ORTHO05D000491 8.5e-12 75.5 121 33.9
Nitab4.5_0001552g0010 Nicotiana tabacum HOM05D008040 ORTHO05D010075 1.5e-11 74.7 253 27.3
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.5e-11 74.7 179 31.3
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 1.9e-11 74.3 234 24.8
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 1.9e-11 74.3 217 27.2
Solyc05g051583.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 2.5e-11 73.9 181 29.8
PGSC0003DMG400029956 Solanum tuberosum HOM05D000664 ORTHO05D000491 2.5e-11 73.9 350 23.7
Duzib177G1036 Durio zibethinus HOM05D000664 ORTHO05D000491 3.2e-11 73.6 286 25.9
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 4.2e-11 73.2 292 26.4
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 5.5e-11 72.8 190 28.9
Dinv16863 Davidia involucrata HOM05D000664 ORTHO05D000491 7.2e-11 72.4 117 34.2
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 7.2e-11 72.4 287 25.8
Nitab4.5_0000413g0120 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.2e-10 71.6 294 22.8
Gorai.013G114100 Gossypium raimondii HOM05D000664 ORTHO05D000491 3.6e-10 70.1 228 28.5
Nitab4.5_0011101g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 6.1e-10 69.3 306 21.9
Rhsim11G0097300 Rhododendron simsii HOM05D061936 ORTHO05D010075 6.1e-10 69.3 164 36.6
Nn8g41009 Nelumbo nucifera HOM05D000664 ORTHO05D000491 8.0e-10 68.9 142 31.7
Gohir.D13G165600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.0e-09 68.6 292 26.4
Os03g0668000 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.0e-09 68.6 314 22.9
Rhsim11G0097100 Rhododendron simsii HOM05D061936 ORTHO05D013267 1.0e-09 68.6 164 36.6
FAN05G1881 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-09 68.2 368 22.3
Sabra05G0040400 Salix brachista HOM05D000664 ORTHO05D000491 2.3e-09 67.4 332 22.6
PGSC0003DMG400007218 Solanum tuberosum HOM05D000664 ORTHO05D000491 2.3e-09 67.4 255 26.7
Dinv25521 Davidia involucrata HOM05D000664 ORTHO05D000491 4.0e-09 66.6 216 25.0
Gohir.A13G096800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 4.0e-09 66.6 228 28.5
Gorai.013G197000 Gossypium raimondii HOM05D000664 ORTHO05D000491 4.0e-09 66.6 289 25.3
HanXRQChr06g0171101 Helianthus annuus HOM05D000664 ORTHO05D000491 4.0e-09 66.6 118 33.1
Thecc.05G238200 Theobroma cacao HOM05D000664 ORTHO05D000491 4.0e-09 66.6 260 28.8
Gohir.A13G160400 Gossypium hirsutum HOM05D000664 ORTHO05D000491 5.2e-09 66.2 294 24.1
Gohir.D13G101806 Gossypium hirsutum HOM05D000664 ORTHO05D000491 5.2e-09 66.2 190 30.0
QL09p019845 Quercus lobata HOM05D011629 ORTHO05D013267 5.2e-09 66.2 185 29.2
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 5.2e-09 66.2 180 27.8
Nn8g41008 Nelumbo nucifera HOM05D000664 ORTHO05D000491 6.8e-09 65.9 245 26.9
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 6.8e-09 65.9 202 27.7
PGSC0003DMG400007221 Solanum tuberosum HOM05D000664 ORTHO05D000491 8.8e-09 65.5 179 27.9
Aqoxy3G02433 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.2e-08 65.1 162 27.2
Actinidia34395 Actinidia chinensis HOM05D033045 ORTHO05D000491 1.5e-08 64.7 174 29.3
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 1.5e-08 64.7 362 24.6
COL.COLO4_38550 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.0e-08 64.3 250 26.4
Duzib106G0932 Durio zibethinus HOM05D000664 ORTHO05D000491 2.0e-08 64.3 296 24.7
SalBow4G1083 Salvia bowleyana HOM05D000664 ORTHO05D000491 2.0e-08 64.3 188 26.6
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.6e-08 63.9 246 25.2
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 2.6e-08 63.9 358 23.7
FvH4_6g52080 Fragaria vesca HOM05D000664 ORTHO05D000491 3.4e-08 63.5 364 22.3
Lsat_1_v5_gn_3_40560 Lactuca sativa HOM05D000664 ORTHO05D000491 3.4e-08 63.5 175 28.0
COL.COLO4_12392 Corchorus olitorius HOM05D026534 ORTHO05D010075 4.4e-08 63.2 87 37.9
FvH4_6g52062 Fragaria vesca HOM05D000664 ORTHO05D000491 4.4e-08 63.2 358 22.9
PGR044G0383 Punica granatum HOM05D000664 ORTHO05D000491 4.4e-08 63.2 184 28.8
Migut.J01668 Erythranthe guttata HOM05D000664 ORTHO05D000491 5.7e-08 62.8 212 26.4
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.7e-08 62.8 196 28.1
Peaxi162Scf00725g00022 Petunia axillaris HOM05D000664 ORTHO05D000491 5.7e-08 62.8 307 23.1
Aqoxy7G02711 Aquilegia oxysepala HOM05D000664 ORTHO05D000491 7.5e-08 62.4 202 27.7
MD16G1239800 Malus domestica HOM05D000664 ORTHO05D000491 7.5e-08 62.4 154 27.9
Duzib106G0771 Durio zibethinus HOM05D000664 ORTHO05D000491 1.3e-07 61.6 230 25.7
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-07 61.6 287 24.4
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 1.3e-07 61.6 240 26.7
BcaB01g05705 Brassica carinata HOM05D000664 ORTHO05D000491 1.7e-07 61.2 197 26.4
Hma1.2p1_1404F.1_g281330 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 1.7e-07 61.2 201 26.4
TAR626G1797 Trochodendron aralioides HOM05D000664 ORTHO05D000491 1.7e-07 61.2 177 28.8
Peaxi162Scf00725g00025 Petunia axillaris HOM05D000664 ORTHO05D000491 2.8e-07 60.5 188 26.1
Sopen04g027220 Solanum pennellii HOM05D000173 ORTHO05D000316 2.8e-07 60.5 305 23.3
SGA_v2.0_scaffold136G35021 Striga asiatica HOM05D000664 ORTHO05D000491 2.8e-07 60.5 173 28.3
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 2.8e-07 60.5 235 24.7
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 3.7e-07 60.1 330 25.2
Duzib177G0141 Durio zibethinus HOM05D000664 ORTHO05D000491 3.7e-07 60.1 248 26.6
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 3.7e-07 60.1 234 24.8
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 4.8e-07 59.7 190 28.4
QL04p017704 Quercus lobata HOM05D008040 ORTHO05D010075 4.8e-07 59.7 90 32.2
Nn8g41006 Nelumbo nucifera HOM05D000664 ORTHO05D000491 8.3e-07 58.9 73 41.1
Peaxi162Scf00725g00213 Petunia axillaris HOM05D000664 ORTHO05D000491 8.3e-07 58.9 173 26.6
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 8.3e-07 58.9 139 28.8
Solyc04g071270.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 8.3e-07 58.9 305 24.3
Dinv09433 Davidia involucrata HOM05D000664 ORTHO05D000491 1.1e-06 58.5 180 26.7
Duzib106G2017 Durio zibethinus HOM05D000664 ORTHO05D000491 1.1e-06 58.5 300 22.3
HanXRQChr12g0365521 Helianthus annuus HOM05D000664 ORTHO05D000491 1.1e-06 58.5 243 23.9
Lj5g0022192 Lotus japonicus HOM05D000664 ORTHO05D000491 1.1e-06 58.5 245 24.9
PSO170G0160 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-06 58.5 147 30.6
PSO724G0409 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-06 58.5 127 29.1
COL.COLO4_14086 Corchorus olitorius HOM05D011629 ORTHO05D013267 1.4e-06 58.2 210 28.1
Dinv26464 Davidia involucrata HOM05D000664 ORTHO05D000491 1.4e-06 58.2 204 26.5
PSO384G0988 Papaver somniferum HOM05D000007 ORTHO05D000017 1.4e-06 58.2 335 22.7
THA.LOC104801597 Tarenaya hassleriana HOM05D000664 ORTHO05D000491 1.4e-06 58.2 187 26.2
Carub.0006s0659 Capsella rubella HOM05D000664 ORTHO05D000491 1.8e-06 57.8 137 29.2
Gohir.A10G001600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.8e-06 57.8 180 29.4
Cc06_g22190 Coffea canephora HOM05D000664 ORTHO05D000491 2.4e-06 57.4 305 23.6
COL.COLO4_37360 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.4e-06 57.4 242 23.6
Gorai.001G050600 Gossypium raimondii HOM05D000664 ORTHO05D000491 2.4e-06 57.4 180 26.1
Rhsim01G0016800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.4e-06 57.4 119 34.5
Rhsim01G0017900 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.4e-06 57.4 119 34.5
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 2.4e-06 57.4 121 33.9
Atru.chr1.884 Acer truncatum HOM05D000664 ORTHO05D000491 3.1e-06 57.0 231 25.1
PSO063G1615 Papaver somniferum HOM05D000664 ORTHO05D000491 3.1e-06 57.0 112 33.0
Potri.005G043500 Populus trichocarpa HOM05D000664 ORTHO05D000491 3.1e-06 57.0 154 27.9
CAN.G231.32 Capsicum annuum HOM05D000664 ORTHO05D000491 4.1e-06 56.6 190 28.4
DCAR_018079 Daucus carota HOM05D000664 ORTHO05D000491 4.1e-06 56.6 183 28.4
Hma1.2p1_0726F.1_g208920 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 4.1e-06 56.6 175 26.9
Hma1.2p1_1883F.1_g306450 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 4.1e-06 56.6 196 25.5
PSO729G0187 Papaver somniferum HOM05D000664 ORTHO05D000491 4.1e-06 56.6 71 39.4
Atru.chr9.129 Acer truncatum HOM05D002420 ORTHO05D002422 5.4e-06 56.2 155 27.1
C04p61800 Brassica napus HOM05D000171 ORTHO05D000101 5.4e-06 56.2 273 23.1
COL.COLO4_31801 Corchorus olitorius HOM05D000664 ORTHO05D000491 5.4e-06 56.2 169 26.0
FvH4_4g06320 Fragaria vesca HOM05D000664 ORTHO05D000491 5.4e-06 56.2 287 23.0
Lsat_1_v5_gn_9_51481 Lactuca sativa HOM05D000664 ORTHO05D000491 5.4e-06 56.2 205 26.3
Rhsim03G0162200 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.4e-06 56.2 253 23.3
COL.COLO4_37348 Corchorus olitorius HOM05D000664 ORTHO05D000491 7.0e-06 55.8 129 27.9
ECA238G1559 Erigeron canadensis HOM05D000664 ORTHO05D000491 7.0e-06 55.8 167 26.9
FvH4_6g52861 Fragaria vesca HOM05D000664 ORTHO05D000491 7.0e-06 55.8 121 34.7
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 7.0e-06 55.8 182 26.4
PSO063G0110 Papaver somniferum HOM05D000664 ORTHO05D000491 7.0e-06 55.8 147 29.9
PSO566G0320 Papaver somniferum HOM05D000664 ORTHO05D000491 7.0e-06 55.8 209 26.8
Thecc.05G238100 Theobroma cacao HOM05D000664 ORTHO05D000491 7.0e-06 55.8 155 27.1
DCAR_018085 Daucus carota HOM05D000664 ORTHO05D000491 9.1e-06 55.5 64 43.8
FvH4_3g43790 Fragaria vesca HOM05D000664 ORTHO05D000491 9.1e-06 55.5 158 26.6
Rhsim01G0017000 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.1e-06 55.5 190 27.4


User provided reference genes

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