Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 3.9e-125 451.4 223 100.0
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.7e-72 276.6 211 66.4
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.8e-69 266.5 220 67.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-68 263.8 220 66.8
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.7e-40 170.2 203 45.3
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 1.9e-39 166.8 217 44.2
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 2.5e-39 166.4 207 44.4
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.5e-39 166.4 207 45.9
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.5e-39 166.4 207 46.9
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.5e-39 166.4 207 46.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 5.6e-39 165.2 207 46.4
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 9.6e-39 164.5 207 46.4
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 9.6e-39 164.5 207 46.4
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-38 163.3 213 43.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.1e-38 163.3 212 45.3
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 2.1e-38 163.3 214 44.4
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 8.1e-38 161.4 214 44.4
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.8e-37 160.2 211 45.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.0e-37 159.1 218 44.0
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 5.2e-37 158.7 212 45.3
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.5e-36 157.1 207 44.9
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.4e-36 156.0 209 44.0
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 9.9e-36 154.5 212 43.9
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.3e-35 154.1 208 43.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.2e-35 153.3 215 44.2
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 4.9e-35 152.1 209 43.1
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 6.4e-35 151.8 205 42.4
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 8.4e-35 151.4 221 43.0
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 8.4e-35 151.4 206 45.1
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-34 151.0 207 43.5
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 4.2e-34 149.1 208 43.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.2e-34 149.1 209 44.5
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 7.1e-34 148.3 209 41.1
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 9.3e-34 147.9 208 40.9
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-33 147.5 220 40.5
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.2e-33 147.5 207 44.9
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.6e-33 147.1 208 43.3
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.1e-33 146.7 204 45.1
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 3.5e-33 146.0 186 44.6
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 4.6e-33 145.6 207 43.5
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.0e-32 144.4 210 44.3
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.3e-32 144.1 208 41.8
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.3e-32 143.3 193 44.6
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.9e-32 142.5 209 42.6
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.9e-32 142.5 206 43.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.1e-32 142.1 202 45.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 5.1e-32 142.1 209 43.5
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-31 141.0 218 41.3
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.5e-31 140.6 224 42.0
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.5e-31 139.8 210 43.3
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.5e-31 139.8 201 39.8
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 3.3e-31 139.4 187 47.6
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 5.6e-31 138.7 210 43.3
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 7.3e-31 138.3 239 40.6
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 9.6e-31 137.9 207 43.5
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.6e-30 137.1 204 40.2
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 2.8e-30 136.3 241 40.2
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 2.8e-30 136.3 241 40.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 3.6e-30 136.0 210 43.3
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.4e-29 134.0 213 40.4
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.4e-29 133.3 210 40.5
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.4e-29 133.3 210 40.5
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.4e-29 133.3 188 42.6
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.1e-29 132.9 189 42.3
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.1e-29 132.9 217 39.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.1e-29 132.9 208 39.9
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 4.0e-29 132.5 173 47.4
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 4.0e-29 132.5 200 36.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.9e-29 131.7 212 42.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 6.9e-29 131.7 215 34.9
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.4e-28 129.4 203 41.4
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.4e-28 129.4 215 37.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.7e-27 127.1 181 42.0
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.7e-27 127.1 207 39.6
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.7e-27 127.1 207 39.6
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.2e-27 126.7 208 39.4
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 3.8e-27 125.9 214 39.7
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 4.9e-27 125.6 207 39.6
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-26 123.2 213 38.0
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.2e-26 122.9 196 37.8
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 7.1e-26 121.7 207 38.6
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.6e-25 120.6 205 37.6
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 2.1e-25 120.2 207 34.8
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-25 120.2 209 35.4
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-25 120.2 209 35.4
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.7e-25 119.8 208 35.1
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.7e-25 119.8 216 35.6
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 3.5e-25 119.4 210 37.6
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.6e-25 119.0 207 36.2
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 4.6e-25 119.0 207 35.3
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 4.6e-25 119.0 208 35.1
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 6.0e-25 118.6 213 36.2
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.9e-25 118.2 205 36.1
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.8e-24 117.1 213 35.2
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.3e-24 116.7 207 34.8
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.3e-24 116.7 162 39.5
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.3e-24 116.7 207 34.8
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.3e-24 116.7 162 39.5
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.3e-24 116.7 207 34.8
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.3e-24 116.7 217 36.9
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.3e-24 116.7 222 35.1
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.0e-24 116.3 217 36.4
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.0e-24 116.3 209 34.0
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.9e-24 115.9 214 37.9
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 3.9e-24 115.9 210 36.7
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 3.9e-24 115.9 193 35.8
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.1e-24 115.5 217 36.4
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 5.1e-24 115.5 211 37.9
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 5.1e-24 115.5 211 36.5
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 6.7e-24 115.2 207 36.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.1e-23 114.4 207 35.7
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-23 114.4 202 36.6
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.1e-23 114.4 211 35.1
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.1e-23 114.4 210 36.7
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-23 113.6 210 36.2
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.5e-23 113.2 108 54.6
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.3e-23 112.8 154 42.9
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 3.3e-23 112.8 211 34.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 4.3e-23 112.5 219 34.2
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 4.3e-23 112.5 213 33.8
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 4.3e-23 112.5 214 32.7
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-23 112.5 203 36.5
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 5.6e-23 112.1 154 41.6
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 5.6e-23 112.1 211 34.1
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 7.4e-23 111.7 166 38.0
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 7.4e-23 111.7 170 38.8
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 9.6e-23 111.3 215 34.4
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 9.6e-23 111.3 218 34.4
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.6e-22 110.5 162 38.3
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 2.1e-22 110.2 162 35.8
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.1e-22 110.2 209 34.9
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.1e-22 110.2 208 34.1
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.1e-22 110.2 215 34.4
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.1e-22 110.2 210 35.7
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.8e-22 109.8 193 39.4
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 3.6e-22 109.4 162 37.0
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.6e-22 109.4 207 36.2
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 4.8e-22 109.0 210 37.1
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 6.2e-22 108.6 159 37.7
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 8.1e-22 108.2 208 38.0
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 8.1e-22 108.2 187 36.4
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.4e-21 106.7 211 33.6
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 6.9e-21 105.1 181 33.1
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 9.0e-21 104.8 215 35.3
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-20 104.4 212 34.0
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.5e-20 104.0 210 33.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.0e-20 103.6 181 34.3
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.6e-20 103.2 203 35.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 3.4e-20 102.8 200 33.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 5.8e-20 102.1 148 39.9
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 7.6e-20 101.7 189 34.4
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 9.9e-20 101.3 211 33.2
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.3e-19 100.9 171 38.0
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.7e-19 100.5 227 33.0
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.2e-19 100.1 216 36.1
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.9e-19 99.8 164 36.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.8e-19 99.4 211 33.6
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-19 99.4 210 32.9
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 6.4e-19 98.6 211 33.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.1e-18 97.8 189 33.9
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.4e-18 97.4 209 33.5
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 3.2e-18 96.3 203 31.5
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.2e-18 96.3 116 40.5
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 7.1e-18 95.1 182 34.6
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 7.1e-18 95.1 211 32.7
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.2e-17 94.4 168 38.1
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.0e-17 92.0 170 32.9
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.5e-15 86.7 99 41.4
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.3e-14 84.3 91 49.5
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 3.7e-14 82.8 177 32.2
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.7e-14 82.8 147 34.0
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 4.8e-14 82.4 87 41.4
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.4e-13 80.9 145 38.6
SEGI_10997 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 1.8e-13 80.5 167 27.5
SEGI_25558 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 1.8e-13 80.5 167 27.5
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.8e-13 80.5 147 37.4
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 4.0e-13 79.3 148 38.5
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.5e-12 77.4 150 34.7
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.6e-12 76.6 148 38.5
Hund13629 Selenicereus undatus HOM05D003474 ORTHO05D003971 7.6e-12 75.1 105 45.7
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 2.2e-11 73.6 150 34.0
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.5e-11 72.0 150 33.3
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-10 70.5 85 44.7
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.5e-10 70.1 139 38.1
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.2e-10 69.7 215 28.4
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.2e-09 67.8 139 35.3
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 1.1e-07 61.2 112 31.2


User provided reference genes

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