Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g122250 Amaranthus hybridus HOM05D009425 ORTHO05D000427 7.7e-112 407.1 204 100.0
EL10Ac3g06699 Beta vulgaris HOM05D009425 ORTHO05D000427 4.2e-49 198.7 193 55.4
EL10Ac3g06696 Beta vulgaris HOM05D009425 ORTHO05D000427 5.1e-47 191.8 190 56.3
EL10Ac3g06705 Beta vulgaris HOM05D009425 ORTHO05D000427 3.7e-45 185.7 198 52.0
EL10Ac3g06647 Beta vulgaris HOM05D009425 ORTHO05D000427 6.3e-45 184.9 191 52.4
EL10Ac3g06703 Beta vulgaris HOM05D009425 ORTHO05D000427 3.1e-44 182.6 189 54.0
EL10Ac3g06694 Beta vulgaris HOM05D009425 ORTHO05D000427 1.5e-43 180.3 196 53.6
EL10Ac3g06697 Beta vulgaris HOM05D009425 ORTHO05D000427 3.4e-43 179.1 205 50.2
EL10Ac4g09444 Beta vulgaris HOM05D009425 ORTHO05D000427 1.4e-41 173.7 194 52.6
Ah.02g122230 Amaranthus hybridus HOM05D009425 ORTHO05D000427 3.0e-39 166.0 191 50.8
Ah.04g161340 Amaranthus hybridus HOM05D009425 ORTHO05D000427 4.3e-38 162.2 191 48.7
Ah.04g161330 Amaranthus hybridus HOM05D009425 ORTHO05D000427 2.2e-37 159.8 191 48.7
EL10Ac6g13201 Beta vulgaris HOM05D009425 ORTHO05D000427 3.4e-27 125.9 202 43.6
AUR62005783 Chenopodium quinoa HOM05D009425 ORTHO05D000427 5.3e-20 102.1 190 40.5
EL10Ac3g06700 Beta vulgaris HOM05D009425 ORTHO05D000427 3.5e-19 99.4 127 48.0
AUR62024285 Chenopodium quinoa HOM05D009425 ORTHO05D000427 1.2e-16 90.9 176 32.4
AUR62005785 Chenopodium quinoa HOM05D000535 ORTHO05D000427 8.0e-16 88.2 214 32.7
Ah.03g135110 Amaranthus hybridus HOM05D000535 ORTHO05D000427 5.2e-15 85.5 192 33.3
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 4.4e-14 82.4 214 34.1
AUR62044108 Chenopodium quinoa HOM05D009425 ORTHO05D000427 3.7e-13 79.3 200 31.0
AUR62028782 Chenopodium quinoa HOM05D009425 ORTHO05D000427 4.8e-13 79.0 198 30.8
AUR62028785 Chenopodium quinoa HOM05D009425 ORTHO05D000427 4.8e-13 79.0 198 30.8
AUR62044111 Chenopodium quinoa HOM05D009425 ORTHO05D000427 4.8e-13 79.0 198 30.8
AUR62044114 Chenopodium quinoa HOM05D009425 ORTHO05D000427 4.8e-13 79.0 198 30.8
AUR62028776 Chenopodium quinoa HOM05D000535 ORTHO05D000427 8.2e-13 78.2 185 31.9
Nitab4.5_0003884g0060 Nicotiana tabacum HOM05D000535 ORTHO05D000427 1.4e-12 77.4 166 34.3
GSVIVG01012936001 Vitis vinifera HOM05D000535 ORTHO05D000427 1.8e-12 77.0 180 31.7
arahy.Tifrunner.gnm1.ann1.TZ4EFW Arachis hypogaea HOM05D000535 ORTHO05D011300 4.1e-12 75.9 200 32.0
Nitab4.5_0012105g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 4.1e-12 75.9 190 33.7
Ah.02g122240 Amaranthus hybridus HOM05D009425 ORTHO05D000427 7.0e-12 75.1 108 42.6
GSVIVG01012922001 Vitis vinifera HOM05D000535 ORTHO05D000427 9.1e-12 74.7 191 30.9
Ah.03g135100 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.7e-11 73.2 207 30.4
Actinidia26771 Actinidia chinensis HOM05D000535 ORTHO05D000427 3.5e-11 72.8 209 31.1
Manes.01G126300 Manihot esculenta HOM05D000535 ORTHO05D000427 3.5e-11 72.8 162 34.6
CAN.G74.22 Capsicum annuum HOM05D000535 ORTHO05D000427 4.5e-11 72.4 193 34.7
Eucgr.K02326 Eucalyptus grandis HOM05D000535 ORTHO05D000427 7.7e-11 71.6 205 31.7
Eucgr.L01961 Eucalyptus grandis HOM05D000535 ORTHO05D000427 7.7e-11 71.6 206 32.5
SGA_v2.0_scaffold25G10739 Striga asiatica HOM05D000535 ORTHO05D000427 7.7e-11 71.6 209 29.2
arahy.Tifrunner.gnm1.ann1.Q36S6K Arachis hypogaea HOM05D000535 ORTHO05D011300 1.0e-10 71.2 203 30.0
AUR62044167 Chenopodium quinoa HOM05D009425 ORTHO05D000427 1.0e-10 71.2 142 33.1
AUR62044482 Chenopodium quinoa HOM05D009425 ORTHO05D000427 1.0e-10 71.2 142 33.1
Eucgr.L03158 Eucalyptus grandis HOM05D000535 ORTHO05D000427 1.0e-10 71.2 205 31.2
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 1.0e-10 71.2 178 31.5
CiPaw.16G075200 Carya illinoinensis HOM05D000535 ORTHO05D000427 1.3e-10 70.9 202 27.7
Glyma.01G095232 Glycine max HOM05D010343 ORTHO05D011300 1.3e-10 70.9 156 31.4
Glyma.09G155500 Glycine max HOM05D000535 ORTHO05D000427 1.3e-10 70.9 202 29.7
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 1.3e-10 70.9 177 33.3
Manes.01G126100 Manihot esculenta HOM05D000535 ORTHO05D000427 2.2e-10 70.1 149 34.9
Medtr6g059680 Medicago truncatula HOM05D000535 ORTHO05D000427 2.2e-10 70.1 209 27.8
vmacro18604 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 2.9e-10 69.7 211 30.3
Aa31LG7G2680 Aethionema arabicum HOM05D000535 ORTHO05D000427 3.8e-10 69.3 176 30.1
A06p13920 Brassica napus HOM05D000535 ORTHO05D000427 3.8e-10 69.3 195 30.8
BraA06t24533Z Brassica rapa HOM05D000535 ORTHO05D000427 3.8e-10 69.3 195 30.8
MELO3C002176.2 Cucumis melo HOM05D000535 ORTHO05D000427 3.8e-10 69.3 195 29.2
Lj2g0009599 Lotus japonicus HOM05D000535 ORTHO05D000427 3.8e-10 69.3 144 35.4
Glyma.08G341400 Glycine max HOM05D000535 ORTHO05D011300 5.0e-10 68.9 104 40.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 5.0e-10 68.9 204 31.4
BcaB07g34010 Brassica carinata HOM05D000535 ORTHO05D000427 6.5e-10 68.6 176 31.2
C05p16240 Brassica napus HOM05D000535 ORTHO05D000427 6.5e-10 68.6 176 31.2
Oeu020486.1 Olea europaea HOM05D000535 ORTHO05D000427 6.5e-10 68.6 215 32.6
Dinv08278 Davidia involucrata HOM05D000535 ORTHO05D000427 8.5e-10 68.2 179 31.3
Potri.017G153200 Populus trichocarpa HOM05D000535 ORTHO05D000427 8.5e-10 68.2 197 32.5
Aa31LG4G3560 Aethionema arabicum HOM05D000535 ORTHO05D000427 1.1e-09 67.8 184 31.5
BolC5t30326H Brassica oleracea HOM05D000535 ORTHO05D000427 1.1e-09 67.8 195 30.8
Os04g0526600 Oryza sativa ssp. japonica HOM05D000535 ORTHO05D000427 1.1e-09 67.8 193 33.7
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 1.1e-09 67.8 223 30.5
TPR.G5828 Trifolium pratense HOM05D000535 ORTHO05D000427 1.1e-09 67.8 178 29.2
Medtr6g059730 Medicago truncatula HOM05D000535 ORTHO05D000427 1.5e-09 67.4 132 31.8
Psat1g112520 Pisum sativum HOM05D000535 ORTHO05D000427 1.9e-09 67.0 211 28.0
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 2.5e-09 66.6 206 29.6
Ciclev10023465m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.2e-09 66.2 178 31.5
PSO017G6542 Papaver somniferum HOM05D000535 ORTHO05D000427 3.2e-09 66.2 217 30.9
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 3.2e-09 66.2 190 32.1
arahy.Tifrunner.gnm1.ann1.U2UX9Q Arachis hypogaea HOM05D000535 ORTHO05D000427 4.2e-09 65.9 200 27.5
Migut.O00272 Erythranthe guttata HOM05D000535 ORTHO05D000427 4.2e-09 65.9 185 30.3
Manes.02G083500 Manihot esculenta HOM05D000535 ORTHO05D000427 4.2e-09 65.9 161 32.3
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.5e-09 65.5 208 28.8
Glyma.08G341500 Glycine max HOM05D010343 ORTHO05D011300 5.5e-09 65.5 202 30.2
Hma1.2p1_0135F.1_g061615 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.5e-09 65.5 184 29.9
Hma1.2p1_0135F.1_g061660 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.5e-09 65.5 184 29.9
Hma1.2p1_1624F.1_g294266 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.5e-09 65.5 184 29.9
Lj2P607T10 Lonicera japonica HOM05D000535 ORTHO05D000427 5.5e-09 65.5 182 30.8
Sabra17G0125900 Salix brachista HOM05D000535 ORTHO05D000427 5.5e-09 65.5 197 31.5
Glyma.08G341600 Glycine max HOM05D010343 ORTHO05D011300 7.2e-09 65.1 126 37.3
Lalb_Chr14g0370191 Lupinus albus HOM05D000535 ORTHO05D000427 7.2e-09 65.1 210 31.0
Medtr6g066210 Medicago truncatula HOM05D000535 ORTHO05D000427 7.2e-09 65.1 167 32.9
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 7.2e-09 65.1 201 30.8
DCAR_011412 Daucus carota HOM05D000535 ORTHO05D000427 9.4e-09 64.7 212 30.2
Manes.01G126000 Manihot esculenta HOM05D000535 ORTHO05D000427 9.4e-09 64.7 129 35.7
Ca_25239_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.2e-08 64.3 200 28.5
PGR044G0702 Punica granatum HOM05D000535 ORTHO05D000427 1.2e-08 64.3 202 30.7
BcaB03g13531 Brassica carinata HOM05D000535 ORTHO05D000427 1.6e-08 63.9 176 29.0
Ciclev10022276m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.6e-08 63.9 178 31.5
Ciclev10022284m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.6e-08 63.9 178 30.9
Glyma.01G095000 Glycine max HOM05D000535 ORTHO05D011300 1.6e-08 63.9 199 31.2
MBI18_g32029_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 1.6e-08 63.9 174 30.5
Phvul.004G129500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.6e-08 63.9 162 33.3
PGR142G1324 Punica granatum HOM05D000535 ORTHO05D000427 1.6e-08 63.9 136 34.6
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.1e-08 63.5 178 30.3
Ah.08g209340 Amaranthus hybridus HOM05D009425 ORTHO05D000427 2.7e-08 63.2 208 29.3
HanXRQChr17g0538161 Helianthus annuus HOM05D000535 ORTHO05D015640 2.7e-08 63.2 125 33.6
A08p30680 Brassica napus HOM05D000535 ORTHO05D000427 3.6e-08 62.8 176 29.0
BraA08t34998Z Brassica rapa HOM05D000535 ORTHO05D000427 3.6e-08 62.8 176 29.0
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.6e-08 62.8 178 29.8
TPR.G5811 Trifolium pratense HOM05D000535 ORTHO05D000427 3.6e-08 62.8 182 29.7
arahy.Tifrunner.gnm1.ann1.9N9F55 Arachis hypogaea HOM05D000535 ORTHO05D000427 4.7e-08 62.4 200 27.5
Ciclev10022282m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.7e-08 62.4 178 31.5
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.7e-08 62.4 178 30.3
MELO3C002177.2 Cucumis melo HOM05D000535 ORTHO05D000427 4.7e-08 62.4 190 29.5
Lj9P411T41 Lonicera japonica HOM05D000535 ORTHO05D000427 4.7e-08 62.4 189 28.6
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.0e-08 61.6 189 31.7
HanXRQChr05g0158941 Helianthus annuus HOM05D000535 ORTHO05D015640 8.0e-08 61.6 135 33.3
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.0e-07 61.2 178 30.3
C08p18230 Brassica napus HOM05D000535 ORTHO05D000427 1.4e-07 60.8 176 29.0
Ciclev10023320m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-07 60.8 178 31.5
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.8e-07 60.5 179 30.2
ECA238G4515 Erigeron canadensis HOM05D000535 ORTHO05D000427 1.8e-07 60.5 203 27.6
Glyma.08G341700 Glycine max HOM05D000535 ORTHO05D011300 2.3e-07 60.1 214 29.0
Ah.08g209360 Amaranthus hybridus HOM05D009425 ORTHO05D000427 4.0e-07 59.3 109 33.0
BcaB03g13529 Brassica carinata HOM05D000535 ORTHO05D000427 4.0e-07 59.3 204 27.5
BcaC08g45656 Brassica carinata HOM05D000535 ORTHO05D000427 4.0e-07 59.3 198 31.3
BolC8t49458H Brassica oleracea HOM05D000535 ORTHO05D000427 4.0e-07 59.3 204 27.5
Glyma.01G096200 Glycine max HOM05D000535 ORTHO05D011300 4.0e-07 59.3 104 40.4
Oeu057516.1 Olea europaea HOM05D000535 ORTHO05D000427 4.0e-07 59.3 163 29.4
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 5.2e-07 58.9 196 30.1
BcaC08g45653 Brassica carinata HOM05D000535 ORTHO05D000427 5.2e-07 58.9 199 32.2
C06p34110 Brassica napus HOM05D000535 ORTHO05D000427 5.2e-07 58.9 199 32.2
Glyma.08G341300 Glycine max HOM05D000535 ORTHO05D011300 5.2e-07 58.9 182 31.9
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 6.8e-07 58.5 199 27.1
ATR0618G349 Amborella trichopoda HOM05D000535 ORTHO05D000427 6.8e-07 58.5 192 30.2
C06p34120 Brassica napus HOM05D000535 ORTHO05D000427 6.8e-07 58.5 198 31.3
Ciclev10016767m.g Citrus clementina HOM05D000535 ORTHO05D000427 6.8e-07 58.5 133 34.6
A07p39230 Brassica napus HOM05D000535 ORTHO05D000427 8.8e-07 58.2 199 31.7
Duzib268G0791 Durio zibethinus HOM05D000535 ORTHO05D000427 8.8e-07 58.2 212 28.3
Lsat_1_v5_gn_2_111441 Lactuca sativa HOM05D000535 ORTHO05D000427 8.8e-07 58.2 203 25.1
Medtr0302s0030 Medicago truncatula HOM05D000535 ORTHO05D000427 8.8e-07 58.2 161 32.3
Potri.004G000400 Populus trichocarpa HOM05D000535 ORTHO05D000427 8.8e-07 58.2 114 35.1
VMungo0349G0001 Vigna mungo HOM05D010343 ORTHO05D011300 8.8e-07 58.2 79 40.5
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 1.2e-06 57.8 163 31.9
Lj2g0010766 Lotus japonicus HOM05D000535 ORTHO05D000427 1.2e-06 57.8 173 29.5
TPR.G27454 Trifolium pratense HOM05D000535 ORTHO05D000427 1.2e-06 57.8 197 29.4
BcaB03g15701 Brassica carinata HOM05D000535 ORTHO05D000427 1.5e-06 57.4 189 31.2
BraA07t30625Z Brassica rapa HOM05D000535 ORTHO05D000427 1.5e-06 57.4 205 32.7
DCAR_026808 Daucus carota HOM05D000535 ORTHO05D000427 1.5e-06 57.4 205 27.8
Glyma.08G235400 Glycine max HOM05D000535 ORTHO05D000427 1.5e-06 57.4 207 28.0
Lsat_1_v5_gn_8_18560 Lactuca sativa HOM05D000535 ORTHO05D015640 1.5e-06 57.4 154 27.3
Lj2g0020121 Lotus japonicus HOM05D000535 ORTHO05D000427 1.5e-06 57.4 177 28.8
Psat0s2953g0040 Pisum sativum HOM05D000535 ORTHO05D000427 1.5e-06 57.4 226 27.9
Psat1g007640 Pisum sativum HOM05D000535 ORTHO05D000427 1.5e-06 57.4 141 32.6
Glyma.08G342000 Glycine max HOM05D000535 ORTHO05D011300 2.0e-06 57.0 207 26.1
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.0e-06 57.0 193 28.5
Duzib268G0986 Durio zibethinus HOM05D000535 ORTHO05D000427 2.6e-06 56.6 206 29.1
HanXRQChr05g0161351 Helianthus annuus HOM05D000535 ORTHO05D000427 2.6e-06 56.6 155 28.4
BcaC08g45655 Brassica carinata HOM05D000535 ORTHO05D000427 3.4e-06 56.2 189 30.7
CsaV3_2G005020 Cucumis sativus L. HOM05D000535 ORTHO05D000427 3.4e-06 56.2 110 36.4
HanXRQChr08g0211891 Helianthus annuus HOM05D000535 ORTHO05D000427 3.4e-06 56.2 197 31.5
VMungo0464G1765 Vigna mungo HOM05D010343 ORTHO05D011300 3.4e-06 56.2 99 36.4
Ca_25361_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 4.4e-06 55.8 142 29.6
Gohir.D10G223650 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.4e-06 55.8 156 30.1
Gorai.011G254500 Gossypium raimondii HOM05D000535 ORTHO05D000427 4.4e-06 55.8 156 30.1
Hma1.2p1_1624F.1_g294263 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.4e-06 55.8 139 31.7
Hma1.2p1_1624F.1_g294280 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.4e-06 55.8 139 31.7
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 4.4e-06 55.8 211 26.1
Lalb_Chr03g0031361 Lupinus albus HOM05D000535 ORTHO05D000427 4.4e-06 55.8 156 31.4
BcaC08g46747 Brassica carinata HOM05D000535 ORTHO05D000427 5.7e-06 55.5 196 31.6
C06p47430 Brassica napus HOM05D000535 ORTHO05D000427 5.7e-06 55.5 196 31.6
BolC6t39781H Brassica oleracea HOM05D000535 ORTHO05D000427 5.7e-06 55.5 196 31.6
CANSAT56G4213 Cannabis sativa HOM05D000535 ORTHO05D000427 5.7e-06 55.5 139 32.4
Duzib268G1310 Durio zibethinus HOM05D000535 ORTHO05D000427 5.7e-06 55.5 203 27.6
Medtr6g065460 Medicago truncatula HOM05D000535 ORTHO05D000427 5.7e-06 55.5 145 33.1
EL10Ac6g13202 Beta vulgaris HOM05D000535 ORTHO05D000427 7.5e-06 55.1 208 26.4
DCAR_011685 Daucus carota HOM05D000535 ORTHO05D000427 7.5e-06 55.1 191 28.3
Duzib268G1738 Durio zibethinus HOM05D000535 ORTHO05D000427 7.5e-06 55.1 203 27.6
HanXRQChr16g0506341 Helianthus annuus HOM05D000535 ORTHO05D000427 7.5e-06 55.1 194 25.8
Lsat_1_v5_gn_2_112040 Lactuca sativa HOM05D000535 ORTHO05D000427 7.5e-06 55.1 204 27.0
Lalb_Chr19g0133691 Lupinus albus HOM05D000535 ORTHO05D000427 7.5e-06 55.1 163 28.8
A07p29870 Brassica napus HOM05D000535 ORTHO05D000427 9.8e-06 54.7 205 32.7
BolC6t38525H Brassica oleracea HOM05D000535 ORTHO05D000427 9.8e-06 54.7 199 31.2
Duzib268G0985 Durio zibethinus HOM05D000535 ORTHO05D000427 9.8e-06 54.7 213 26.3
Medtr3g463590 Medicago truncatula HOM05D000535 ORTHO05D000427 9.8e-06 54.7 121 31.4


User provided reference genes

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