Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 1.0e-80 305.1 239 100.0
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 4.1e-37 160.2 233 72.5
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 2.7e-36 157.5 240 68.3
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.3e-34 150.6 235 60.0
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 4.4e-31 140.2 229 60.7
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 2.5e-26 124.4 234 63.7
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 8.1e-25 119.4 234 63.7
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 5.2e-24 116.7 222 66.7
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 4.4e-23 113.6 233 60.9
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.1e-21 109.0 231 63.2
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 3.2e-21 107.5 234 62.8
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 9.2e-21 105.9 234 61.1
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 4.6e-20 103.6 234 62.4
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 1.0e-19 102.4 234 58.5
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.7e-19 101.7 233 59.2
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 1.7e-19 101.7 233 58.8
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 3.9e-19 100.5 233 59.7
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 6.6e-19 99.8 234 59.4
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 6.6e-19 99.8 236 61.9
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 8.7e-19 99.4 233 59.2
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.1e-18 99.0 226 55.8
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 3.3e-18 97.4 231 58.9
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 5.6e-18 96.7 234 61.1
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 5.6e-18 96.7 236 61.0
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 5.6e-18 96.7 230 58.7
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 9.6e-18 95.9 229 60.3
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 9.6e-18 95.9 232 62.1
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.2e-17 95.5 216 64.4
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 1.6e-17 95.1 227 58.1
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 1.6e-17 95.1 229 60.7
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 1.6e-17 95.1 235 60.0
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 2.1e-17 94.7 233 56.2
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 3.6e-17 94.0 221 58.8
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 4.7e-17 93.6 234 59.8
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 4.7e-17 93.6 234 58.5
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.1e-16 92.4 234 59.4
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 1.1e-16 92.4 228 58.3
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 1.1e-16 92.4 222 60.8
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 3.1e-16 90.9 229 59.4
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 3.1e-16 90.9 221 62.0
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 5.2e-16 90.1 232 50.4
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 9.0e-16 89.4 242 58.7
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.5e-15 88.6 230 59.6
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 2.0e-15 88.2 228 60.5
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.6e-15 87.8 237 50.6
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 2.6e-15 87.8 96 47.9
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.4e-15 87.4 238 58.0
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.4e-15 87.4 234 58.5
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 1.7e-14 85.1 227 49.3
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.2e-14 84.7 237 57.8
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 4.9e-14 83.6 226 41.6
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 8.4e-14 82.8 230 57.8
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-13 82.4 237 56.5
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 1.1e-13 82.4 234 58.5
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 2.4e-13 81.3 227 61.2
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 7.1e-13 79.7 231 60.6
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 9.3e-13 79.3 235 52.8
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.2e-12 79.0 205 62.0
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 2.1e-12 78.2 228 50.9
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 3.5e-12 77.4 234 57.7
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 3.5e-12 77.4 178 66.9
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 3.5e-12 77.4 224 53.6
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 7.8e-12 76.3 176 69.3
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 7.8e-12 76.3 233 54.1
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 3.9e-11 73.9 234 57.7
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 1.9e-10 71.6 202 62.4
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.5e-10 71.2 226 56.6
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 5.6e-10 70.1 234 56.8
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 7.3e-10 69.7 223 59.6
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 9.6e-10 69.3 234 56.4
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.6e-09 68.6 208 63.0
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 3.6e-09 67.4 85 37.6
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 1.4e-08 65.5 175 56.6
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.4e-08 65.5 92 41.3
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 4.0e-08 63.9 207 60.4
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 9.0e-08 62.8 209 61.7
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 1.2e-07 62.4 223 58.7
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 1.5e-07 62.0 223 57.8
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.5e-07 62.0 223 57.8
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 3.4e-07 60.8 222 57.2
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 1.3e-06 58.9 221 57.5
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 6.4e-06 56.6 98 38.8


User provided reference genes

Program Settings