Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 1.6e-129 466.1 239 100.0
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 2.4e-64 249.6 234 60.3
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.2e-64 249.2 234 59.8
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.2e-64 249.2 234 59.8
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 4.0e-59 232.3 262 55.3
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 8.4e-49 198.0 228 51.8
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 2.9e-41 172.9 213 52.6
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 2.3e-38 163.3 221 45.2
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 5.6e-37 158.7 218 46.8
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 6.2e-36 155.2 190 47.4
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 6.2e-36 155.2 209 42.1
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.4e-35 154.1 181 47.0
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 1.8e-35 153.7 213 45.1
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 3.1e-35 152.9 210 43.3
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 3.4e-34 149.4 219 43.4
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 3.4e-34 149.4 210 43.3
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.5e-34 149.1 210 42.9
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 7.6e-34 148.3 177 46.9
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 3.8e-33 146.0 193 42.0
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 3.8e-33 146.0 186 45.2
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 4.9e-33 145.6 193 42.0
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.1e-32 144.4 232 40.1
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 1.4e-32 144.1 185 46.5
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.1e-31 140.2 165 48.5
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 2.7e-31 139.8 222 38.7
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 7.9e-31 138.3 187 43.9
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 1.0e-30 137.9 184 43.5
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 2.3e-30 136.7 222 40.1
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 5.1e-30 135.6 193 40.4
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 1.1e-29 134.4 189 40.2
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.1e-29 134.4 216 38.4
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 1.5e-29 134.0 183 41.0
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.9e-29 133.7 187 41.2
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 2.5e-29 133.3 189 40.2
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 3.3e-29 132.9 187 41.2
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 5.6e-29 132.1 193 40.4
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 5.6e-29 132.1 201 40.3
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 7.4e-29 131.7 203 37.4
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 9.6e-29 131.3 240 36.7
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.3e-28 131.0 201 40.3
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 1.3e-28 131.0 188 40.4
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.6e-28 130.6 184 43.5
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 1.6e-28 130.6 215 37.7
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 2.1e-28 130.2 203 41.4
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.8e-28 129.8 201 39.8
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 2.8e-28 129.8 231 37.2
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 3.7e-28 129.4 145 45.5
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 3.7e-28 129.4 177 44.1
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 3.7e-28 129.4 180 41.7
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 3.7e-28 129.4 215 37.7
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 4.8e-28 129.0 187 38.5
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.1e-27 127.9 180 41.1
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.8e-27 127.1 144 45.8
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 2.4e-27 126.7 230 36.5
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 4.0e-27 125.9 206 38.8
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 4.0e-27 125.9 196 38.8
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 2.0e-26 123.6 224 38.8
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 3.4e-26 122.9 185 40.0
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 4.5e-26 122.5 189 38.1
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 9.9e-26 121.3 181 40.9
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 9.9e-26 121.3 193 37.8
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 2.9e-25 119.8 181 39.2
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 4.9e-25 119.0 179 39.7
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 4.9e-25 119.0 157 42.7
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 4.9e-25 119.0 216 38.4
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 6.4e-25 118.6 181 39.8
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 6.4e-25 118.6 181 38.7
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 6.4e-25 118.6 157 41.4
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 6.4e-25 118.6 181 38.7
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 1.4e-24 117.5 171 41.5
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 2.4e-24 116.7 213 35.7
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 2.4e-24 116.7 209 38.3
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 2.4e-24 116.7 204 37.3
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 7.1e-24 115.2 137 45.3
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 1.2e-23 114.4 187 38.0
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 1.6e-23 114.0 185 41.1
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 2.1e-23 113.6 208 35.6
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 7.9e-23 111.7 212 35.8
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 1.0e-22 111.3 213 34.7
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.8e-22 110.5 180 37.8
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 8.7e-22 108.2 186 39.8
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 4.3e-21 105.9 205 38.0
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 7.4e-21 105.1 202 36.1
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 9.0e-19 98.2 228 30.3
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 2.0e-18 97.1 194 31.4
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 2.6e-18 96.7 177 38.4
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 5.8e-18 95.5 116 41.4
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 1.0e-17 94.7 188 30.3
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 3.8e-17 92.8 196 29.1
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 3.8e-17 92.8 113 43.4
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 1.1e-16 91.3 111 45.9
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 5.5e-16 89.0 108 41.7
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 5.5e-16 89.0 167 32.9
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 3.5e-15 86.3 101 42.6
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 3.5e-15 86.3 216 30.6
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.0e-14 84.7 118 39.8
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 1.0e-14 84.7 148 37.2
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 1.1e-13 81.3 99 43.4
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 2.5e-13 80.1 137 38.0
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 4.5e-10 69.3 106 34.0
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 7.7e-10 68.6 225 26.2
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.0e-09 68.2 110 40.0
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.3e-09 67.8 102 37.3
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 2.7e-07 60.1 125 36.8
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 6.7e-06 55.5 106 31.1
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 8.8e-06 55.1 107 29.0


User provided reference genes

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